Factsheet for Bra023408.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
plasma membrane 2
cytosol 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85654	Canola	cytosol, plasma membrane, plastid	99.84	99.84
AT5G13400.1	Thale cress	plasma membrane	94.69	94.39
KRH01794	Soybean	cytosol, peroxisome, plasma membrane	79.26	78.13
VIT_01s0150g00250.t01	Wine grape	cytosol, peroxisome, plasma membrane	79.26	77.03
PGSC0003DMT400072037	Potato	cytosol, peroxisome, plasma membrane	78.46	74.73
GSMUA_Achr9P01100_001	Banana	cytosol, peroxisome, plasma membrane	69.77	72.94
Zm00001d040201_P001	Maize	plasma membrane	72.35	68.08
EES00465	Sorghum	plastid	72.99	68.07
HORVU3Hr1G014510.3	Barley	plastid	69.29	66.1
TraesCS3B01G095900.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	68.97	66.0
TraesCS3D01G081100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	68.97	65.6
TraesCS3A01G081100.3	Wheat	cytosol, peroxisome, plasma membrane, plastid	66.24	65.5
Os01t0103100-01	Rice	plasma membrane	62.7	64.36
EES19057	Sorghum	plastid	24.92	62.0
Bra019744.1-P	Field mustard	plasma membrane	15.43	35.82
Bra023868.1-P	Field mustard	plasma membrane	33.12	35.64
Bra012052.1-P	Field mustard	plasma membrane	28.94	34.55
Bra026991.1-P	Field mustard	plasma membrane	32.48	34.3
Bra031295.1-P	Field mustard	plasma membrane	31.67	33.73
Bra016789.1-P	Field mustard	plasma membrane	31.99	33.73
Bra028002.1-P	Field mustard	peroxisome	30.55	31.67
Bra035429.1-P	Field mustard	plasma membrane	30.06	31.48
Bra013222.1-P	Field mustard	plasma membrane	25.88	31.26
Bra027836.1-P	Field mustard	plasma membrane	30.06	31.01
Bra010117.1-P	Field mustard	plasma membrane	27.33	30.63
Bra013221.1-P	Field mustard	plasma membrane	25.24	30.43
Bra011937.1-P	Field mustard	plasma membrane	24.6	29.54
Bra012431.1-P	Field mustard	plasma membrane	11.9	29.02

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.9	EnsemblPlantsGene:Bra023408	EnsemblPlants:Bra023408.1	EnsemblPlants:Bra023408.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006857	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846	UniProt:M4E3Q5	InterPro:MFS_dom
InterPro:MFS_trans_sf	PFAM:PF00854	InterPro:POT_fam	ScanProsite:PS01022	PANTHER:PTHR11654	PANTHER:PTHR11654:SF112
InterPro:PTR2_symporter_CS	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI0002543486	SEG:seg	:

Description

AT5G13400 (E=0.0) | proton-dependent oligopeptide transport (POT) family protein

Coordinates

chrA02:-:3263245..3265421

Molecular Weight (calculated)

68998.2 Da

IEP (calculated)

8.489

GRAVY (calculated)

0.332

Length

622 amino acids

Sequence
(BLAST)

001: MVVSEIKSPL TPGGCSSSSV HRKELSVFFL ESDNRRLALG RGYTGGTTPV NIHGKPIANL SKTGGWIAAL FIFGNEMAER MAYFGLSVNM VAFMFYVMHR
101: PFESSSNAVN NFLGISQASS VLGGFLADAY LGRYWTIAIF TTMYLLGLIG ITLGASLKMF VPDQSNCDQL SLLLGNCQPA KSWQMLYLYT VLYITGFGAA
201: GIRPCVSSFG ADQFDEKSKE YKTHLDRFFN FFYLSVTLGA IIAFTLVVYV QMEHGWGMAF GTLAIAMAIS NALFFAGTPL YRHRLPGGSP LTRVAQVLVA
301: AFRKRGAAFT SSEFIGLYEV PGLKSAINGS RKIPHTEDFR WLDKAALQLK EDGLEPSPWK LCTVTQVEEV KILIRLIPIP ACTVMLSLVL TEYLTLSVQQ
401: AYTLNTHIQH LKLPVTCMPV FPGLSIFLIL SLYYSVFVPI TRRITGNPHG ASQLQRVGIG LAVSIISVAW AGLFENYRRH YAIQHGFEFN FLTQMPDLTA
501: YWLLIQYCLI GIAEVFCIVG LLEFLYEEAP DAMKSIGSAY AALAGGLGCF AATILNNIVK AATRNSDGNS WLSQNINTGR FDCLYWLLTL LSLLNFCVFL
601: WSAHRYKYRA VETEEDKSRT YL

Best Arabidopsis Sequence Match ( AT5G13400.1 )
(BLAST)

001: MVASEIKSPV SVPETPGSSS VHHRKQLSVF FIESDNRRLA LGRGYTGGTT PVNIHGKPIA NLSKTGGWIA AFFIFGNEMA ERMAYFGLSV NMVAFMFYVM
101: HRPFESSSNA VNNFLGISQA SSVLGGFLAD AYLGRYWTIA IFTTMYLVGL IGITLGASLK MFVPDQSNCG QLSLLLGNCE EAKSWQMLYL YTVLYITGFG
201: AAGIRPCVSS FGADQFDEKS KDYKTHLDRF FNFFYLSVTL GAIIAFTLVV YVQMELGWGM AFGTLAVAMG ISNALFFAGT PLYRHRLPGG SPLTRVAQVL
301: VAAFRKRNAA FTSSEFIGLY EVPGLKSAIN GSRKIPHSND FIWLDKAALE LKEDGLEPSP WKLCTVTQVE EVKILIRLIP IPTCTIMLSL VLTEYLTLSV
401: QQAYTLNTHI QHLKLPVTCM PVFPGLSIFL ILSLYYSVFV PITRRITGNP HGASQLQRVG IGLAVSIISV AWAGLFENYR RHYAIQNGFE FNFLTQMPDL
501: TAYWLLIQYC LIGIAEVFCI VGLLEFLYEE APDAMKSIGS AYAALAGGLG CFAATILNNI VKAATRDSDG KSWLSQNINT GRFDCLYWLL TLLSFLNFCV
601: FLWSAHRYKY RAIESEEDKS SAVL

Arabidopsis Description

NPF6.1Protein NRT1/ PTR FAMILY 6.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYR6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.