Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G251800.1 | |
| TraesCS2B01G271700.1 | |
| TraesCS2D01G252600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12110.1 | TraesCS2A01G251800.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2B01G271700.1 | AT1G30270.1 | 19766570 |
| AT1G12110.1 | TraesCS2D01G252600.1 | AT1G30270.1 | 19766570 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G224900.1 | Wheat | plasma membrane | 97.99 | 97.99 |
| TraesCS1A01G210900.1 | Wheat | plasma membrane | 78.69 | 97.1 |
| HORVU1Hr1G053990.4 | Barley | peroxisome | 97.15 | 93.84 |
| TraesCS1D01G214300.1 | Wheat | plasma membrane | 89.77 | 89.92 |
| Os10t0554200-02 | Rice | plasma membrane | 85.57 | 85.57 |
| Zm00001d029932_P001 | Maize | plasma membrane | 84.4 | 84.54 |
| EER91957 | Sorghum | plasma membrane | 84.23 | 84.37 |
| Zm00001d029933_P001 | Maize | cytosol, peroxisome, plasma membrane | 82.21 | 83.33 |
| TraesCS4D01G361500.1 | Wheat | peroxisome | 71.14 | 69.97 |
| GSMUA_Achr11P... | Banana | plasma membrane | 64.77 | 68.08 |
| GSMUA_Achr8P11190_001 | Banana | peroxisome | 64.43 | 67.96 |
| GSMUA_Achr8P11180_001 | Banana | peroxisome | 63.76 | 66.78 |
| KRH28055 | Soybean | plasma membrane | 64.77 | 65.87 |
| KRH77380 | Soybean | cytosol, plasma membrane, plastid | 64.26 | 65.36 |
| PGSC0003DMT400012226 | Potato | cytosol, peroxisome, plasma membrane | 63.76 | 64.41 |
| TraesCS7D01G297000.1 | Wheat | plasma membrane | 65.1 | 64.34 |
| GSMUA_Achr11P... | Banana | peroxisome | 60.74 | 64.3 |
| Solyc08g078950.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 63.42 | 64.07 |
| CDY30051 | Canola | cytosol, peroxisome, plasma membrane | 37.42 | 63.9 |
| PGSC0003DMT400032493 | Potato | cytosol, peroxisome, plasma membrane | 61.41 | 62.03 |
| Solyc08g007430.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 61.24 | 61.86 |
| CDY15967 | Canola | plasma membrane | 59.06 | 61.32 |
| CDY26539 | Canola | plasma membrane | 58.89 | 61.15 |
| CDY69100 | Canola | plasma membrane | 34.06 | 61.14 |
| KRH04097 | Soybean | peroxisome | 60.91 | 61.11 |
| AT1G12110.1 | Thale cress | plasma membrane | 60.4 | 61.02 |
| Bra026991.1-P | Field mustard | plasma membrane | 60.23 | 60.95 |
| Bra019744.1-P | Field mustard | plasma membrane | 27.18 | 60.45 |
| CDY21035 | Canola | plasma membrane | 58.22 | 60.35 |
| Bra016789.1-P | Field mustard | plasma membrane | 59.73 | 60.34 |
| CDY31242 | Canola | plasma membrane | 58.05 | 60.17 |
| VIT_02s0154g00260.t01 | Wine grape | plastid | 64.6 | 59.78 |
| Solyc06g060620.2.1 | Tomato | plasma membrane | 58.22 | 58.61 |
| KRH57369 | Soybean | plasma membrane | 57.89 | 58.47 |
| PGSC0003DMT400035882 | Potato | plasma membrane | 57.38 | 57.77 |
| TraesCS1D01G032700.1 | Wheat | peroxisome | 49.33 | 50.52 |
| TraesCS2D01G327000.1 | Wheat | plasma membrane | 47.15 | 49.73 |
| TraesCS5D01G419200.2 | Wheat | plasma membrane | 47.32 | 47.4 |
| TraesCS2D01G307400.1 | Wheat | plasma membrane | 34.9 | 35.74 |
| TraesCS7D01G357300.2 | Wheat | plasma membrane | 36.07 | 34.79 |
| TraesCS4D01G087900.1 | Wheat | golgi, peroxisome, plasma membrane | 33.89 | 33.39 |
| TraesCS3D01G081100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 36.41 | 33.18 |
| TraesCS5D01G398000.1 | Wheat | plasma membrane | 31.88 | 32.7 |
| TraesCS2D01G348600.1 | Wheat | plasma membrane | 30.03 | 32.02 |
| TraesCS2D01G348500.1 | Wheat | plasma membrane | 29.03 | 30.95 |
| TraesCS5D01G067100.1 | Wheat | plasma membrane | 28.19 | 29.95 |
| TraesCS2D01G259400.2 | Wheat | plasma membrane | 29.03 | 29.88 |
| TraesCS5D01G067400.1 | Wheat | plasma membrane | 28.02 | 29.77 |
| TraesCS2D01G348400.1 | Wheat | plasma membrane | 23.99 | 26.0 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G214200.1 | EnsemblPlantsGene:TraesCS1D01G214200 | Gene3D:1.20.1250.20 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006857 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0022857 | GO:GO:0055085 |
| InterPro:MFS_trans_sf | InterPro:POT_fam | InterPro:PTR2_symporter_CS | PANTHER:PTHR11654 | PANTHER:PTHR11654:SF136 | PFAM:PF00854 |
| ScanProsite:PS01022 | SUPFAM:SSF103473 | TMHMM:TMhelix | MapMan:24.2.2.9 | : | : |
Description
No Description!
Coordinates
chr1D:+:299576089..299578360
Molecular Weight (calculated)
63920.2 Da
IEP (calculated)
7.473
GRAVY (calculated)
0.398
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVLPEIAA EGKGILTDAW DSKGRPAARS TTGGWGCAAM ILGAELFERM TTLGIAVNLV PYMTGTMHLG SAAAANTVTN FIGTSFMLCL LGGFVADTYL
101: GRYLTIAVFS AVQATGVMVL TISTVAPGLR PAVCGDATGQ SPDCVPANET QLGVLYLGLY MTALGTGGLK SSVSGFGSDQ FDESDDGERK KMMRFFNWFY
201: FFVSIGALLA VTVLVYVQDN IGRRWGYGIC AVGILAGLGV FLCGTKMYRF KKLVGSPLTQ VAAVTTAAWS KRALPLPSDP SMLYDVDDAA AAGEDLKGKQ
301: KLPHSKECRF LDHAAIIDRA EAASPAEASK WTLCTRTDVE EVKQVVRMLP IWATTIMFWT IHAQMTTFAV EQASLMDRGI GGSGFLVPAG SLTVFLIGSI
401: LLTVPLYDRL VAPVARRITG NPHGLSPLQR VFVGLFLSII GMAAAAIVER HRLTSSTHGV TLTVFLLMPQ FLLVGAGEAF TYMGQLDFFL RECPKGMKTM
501: STGLFLSTCA LGFFFSTVTV TIVHKVTGHG PRGTGGWLAD NLDQGRLDYF YWLLAVMSAI NIVFFTIAAR GYVYKEKRLA DAGIELADEE AMIVGH
101: GRYLTIAVFS AVQATGVMVL TISTVAPGLR PAVCGDATGQ SPDCVPANET QLGVLYLGLY MTALGTGGLK SSVSGFGSDQ FDESDDGERK KMMRFFNWFY
201: FFVSIGALLA VTVLVYVQDN IGRRWGYGIC AVGILAGLGV FLCGTKMYRF KKLVGSPLTQ VAAVTTAAWS KRALPLPSDP SMLYDVDDAA AAGEDLKGKQ
301: KLPHSKECRF LDHAAIIDRA EAASPAEASK WTLCTRTDVE EVKQVVRMLP IWATTIMFWT IHAQMTTFAV EQASLMDRGI GGSGFLVPAG SLTVFLIGSI
401: LLTVPLYDRL VAPVARRITG NPHGLSPLQR VFVGLFLSII GMAAAAIVER HRLTSSTHGV TLTVFLLMPQ FLLVGAGEAF TYMGQLDFFL RECPKGMKTM
501: STGLFLSTCA LGFFFSTVTV TIVHKVTGHG PRGTGGWLAD NLDQGRLDYF YWLLAVMSAI NIVFFTIAAR GYVYKEKRLA DAGIELADEE AMIVGH
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
Arabidopsis Description
NPF6.3NRT1.1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.