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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d025748_P001 Maize plasma membrane 83.09 82.33
TraesCS2A01G350000.1 Wheat plasma membrane 68.75 69.13
TraesCS2D01G348400.1 Wheat plasma membrane 68.75 68.0
TraesCS2B01G368500.1 Wheat plasma membrane 68.38 67.64
TraesCS2B01G368400.1 Wheat plasma membrane 68.2 67.45
OQU81850 Sorghum plasma membrane 41.73 41.27
EES15875 Sorghum plasma membrane 42.28 40.42
KXG28299 Sorghum plasma membrane 42.1 39.69
OQU83318 Sorghum mitochondrion, plasma membrane 36.95 39.18
OQU81851 Sorghum plasma membrane 40.07 38.72
KXG26617 Sorghum plasma membrane 41.73 38.54
EES15876 Sorghum plasma membrane 39.71 38.43
EES15877 Sorghum plasma membrane 38.24 36.36
EES14657 Sorghum plasma membrane 37.68 35.96
EES11151 Sorghum plasma membrane 35.85 33.51
Solyc04g079510.1.1 Tomato plasma membrane 30.51 29.07
KRH51937 Soybean plasma membrane 30.15 28.67
OQU83190 Sorghum plasma membrane 29.23 28.09
PGSC0003DMT400030534 Potato plasma membrane 30.15 28.03
EES12219 Sorghum plasma membrane 30.15 27.84
Solyc04g079530.2.1 Tomato plasma membrane 29.41 27.63
PGSC0003DMT400030533 Potato plasma membrane 29.41 27.49
Solyc04g079520.2.1 Tomato plasma membrane 29.23 27.32
KRH61236 Soybean plasma membrane 30.7 27.29
PGSC0003DMT400054593 Potato plasma membrane 30.7 27.2
EER89980 Sorghum plasma membrane 29.23 26.41
KRH02511 Soybean plasma membrane 28.68 26.26
KRH68384 Soybean plasma membrane 27.94 26.12
KXG24751 Sorghum peroxisome, plasma membrane, vacuole 28.86 26.08
KRG96656 Soybean plasma membrane 27.39 25.87
OQU87541 Sorghum cytosol, peroxisome, plasma membrane 29.04 25.77
KRH19434 Soybean plasma membrane 27.94 25.76
VIT_18s0001g11280.t01 Wine grape plastid 29.96 25.63
Solyc10g039290.1.1 Tomato plasma membrane 26.84 25.52
PGSC0003DMT400011063 Potato cytosol 27.02 25.21
EES05323 Sorghum plasma membrane 27.39 24.96
Solyc01g102360.1.1 Tomato plasma membrane 27.76 24.79
PGSC0003DMT400030530 Potato mitochondrion 15.81 24.5
KRG90426 Soybean plasma membrane 27.02 24.46
PGSC0003DMT400046950 Potato plasma membrane 27.39 24.39
VIT_14s0060g00220.t01 Wine grape plasma membrane 27.57 24.27
KRH33721 Soybean plasma membrane 26.84 24.17
EES13374 Sorghum plasma membrane 26.65 24.13
EER91957 Sorghum plasma membrane 25.74 23.53
KXG32694 Sorghum cytosol 25.0 23.17
OQU93471 Sorghum plasma membrane 24.26 21.82
EES00465 Sorghum plastid 26.65 21.74
GSMUA_Achr11P... Banana plasma membrane 25.18 20.73
EES19057 Sorghum plastid 7.9 17.2
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.9UniProt:C5YBD0EnsemblPlants:EES12425ProteinID:EES12425ProteinID:EES12425.2
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0022857GO:GO:0055085InterPro:MFS_trans_sfPFAM:PF00854InterPro:POT_fam
PANTHER:PTHR11654PANTHER:PTHR11654:SF109EnsemblPlantsGene:SORBI_3006G130700SUPFAM:SSF103473unigene:Sbi.19734TMHMM:TMhelix
UniParc:UPI00081AD87FSEG:seg::::
Description
hypothetical protein
Coordinates
chr6:-:49487848..49494840
Molecular Weight (calculated)
59775.6 Da
IEP (calculated)
7.957
GRAVY (calculated)
0.414
Length
544 amino acids
Sequence
(BLAST)
001: MEEGEEVYVD WRGNAVDERR HGGIRATVFL YVLFMIRSCS NSSNFSMVAY LHGMLHLDIV TSSTVISYLV GTVMISAAAM NFISDACIKR TTAIFVFGPC
101: VVLGYMLLAL QAHFPSLHPE ICAIDKEPNN CEAAQGWNLT LLYLSLLIFA IGEGCMRACI PSLGGDQFSN SDPKKSQLQS MFLTRLKFTN SLGAIIGLAF
201: LVWIENNLGW DIGFMMCALI VLVGLLVAAS GYPFYRMQKP SGSPLTRTLQ VLIISSNKKA VANVDVIELQ ETNTQDHVFK FGTNQADETK VLIQMLPVFI
301: SCFLVYLPFT LLMTLSIQVG RAMDKGAGVI QIPSASLIAI PTTFHVLMQP CYSRILTILL RRTTGHEHGV TPLQRIGAGS ICGIAAACVA TLVEARRLNV
401: AKQQGLTSIG TGVPMSIFWL VIQFFLLSIM DIASFGGLIE FIESEAPSTM KPIAPAVQSC IAGLAAWSCS GFIQLVNRMT RSGNGGGGWL DGTNFNKTRL
501: DHFFLLLGAF ELLALINYTF WARRYARKLR RISTVETHED DTRH
Best Arabidopsis Sequence Match ( AT1G27040.1 )
(BLAST)
001: MEVEMHGDVS KWEGYADWRN KAALRGRHGG MLAASFVLAV EILENLAFLA NASNLVLYLK NFMHMSLARS SSEVTTFMAT AFLLALLGGF LADAFFSTFV
101: IFLISASIEF LGLILLTIQA RRPSLMPPPC KSSAALRCEV VGGSKAAFLF VGLYLVSLGI GGIKGSLPSH GAEQFDEGTP KGRKQRSTFF NYYVFCLSCG
201: ALVAVTFVVW IEDNKGWEWG FGVSTISIFL SILVFLLGSR FYKNKIPRGS PLTTIFKVLL AASIVSCSSK TSSNHFTSRE VQSEHEEKTP SQSLTNSLTC
301: LNKAIEGKTH HIWLECTVQQ VEDVKIVLKM LPIFGCTIML NCCLAQLSTY SVHQAATMNR KIVNFNVPSA SLPVFPVVFM LILAPTYDHL IIPFARKVTK
401: SEIGITHLQR IGVGLVLSIV AMAVAALVEL KRKQVAREAG LLDSEETLPI TFLWIALQYL FLGSADLFTL AGLLEFFFTE APSSMRSLAT SLSWASLALG
501: YYLSSVMVPI VNRVTKSAGQ SPWLGEKLNR NRLDLFYWLM CVLSVVNFLH YLFWAKRYKY ISTGSIS
Arabidopsis Description
NPF4.5Protein NRT1/ PTR FAMILY 4.5 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYE4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.