Factsheet for PGSC0003DMT400055602

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g034220.2.1	Tomato	nucleus	92.51	92.51
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	58.59	55.65
Bra003313.1-P	Field mustard	cytosol	54.63	55.61
CDX83400	Canola	cytosol, nucleus, plasma membrane	58.15	54.77
KRH65384	Soybean	cytosol	57.71	54.36
CDX89063	Canola	cytosol, golgi, plasma membrane	56.83	53.97
CDY41153	Canola	cytosol	56.39	53.78
CDY56247	Canola	cytosol	56.83	53.75
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	56.39	53.56
CDY48365	Canola	cytosol	56.39	53.56
CDY37029	Canola	cytosol, golgi, plasma membrane	56.39	53.56
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	56.39	53.56
KRH76164	Soybean	endoplasmic reticulum	56.83	53.53
CDX71796	Canola	cytosol	55.95	53.36
CDY57247	Canola	cytosol	56.39	53.33
CDY27392	Canola	cytosol, golgi, plasma membrane	55.95	53.14
CDX95631	Canola	cytosol, golgi, plasma membrane	56.39	53.11
Bra007547.1-P	Field mustard	cytosol	55.51	52.94
CDX67837	Canola	cytosol, golgi, plasma membrane	55.95	52.92
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	55.95	52.92
PGSC0003DMT400032484	Potato	cytosol, nucleus, plasma membrane	49.34	52.83
Zm00001d017390_P001	Maize	cytosol	49.34	49.78
KXG31128	Sorghum	cytosol	49.34	49.78
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	49.78	49.56
GSMUA_Achr1P20280_001	Banana	cytosol	46.7	49.53
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	51.98	49.37
Zm00001d051288_P001	Maize	cytosol	48.9	49.33
Os04t0534400-01	Rice	cytosol	54.19	49.2
TraesCS6D01G220300.1	Wheat	cytosol	49.34	49.12
GSMUA_Achr5P20880_001	Banana	cytosol	51.1	48.54
PGSC0003DMT400066797	Potato	cytosol	51.1	48.33
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	48.46	48.25
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	48.46	48.25
EES12559	Sorghum	cytosol	52.86	48.19
TraesCS2B01G385700.2	Wheat	cytosol	52.42	47.79
TraesCS2A01G368500.1	Wheat	cytosol	52.42	47.79
Os08t0156700-01	Rice	plasma membrane	51.1	47.74
TraesCS2D01G365300.2	Wheat	cytosol	51.98	47.39
Zm00001d049553_P001	Maize	plasma membrane	50.66	47.13
HORVU2Hr1G091830.4	Barley	cytosol	51.54	46.99
PGSC0003DMT400066920	Potato	cytosol	54.63	46.44
EES14570	Sorghum	cytosol, nucleus, plasma membrane	49.78	46.31
Bra035442.1-P	Field mustard	cytosol	21.59	45.37
TraesCS7A01G300700.1	Wheat	cytosol	48.46	45.27
TraesCS7D01G296400.1	Wheat	cytosol	48.46	45.27
GSMUA_Achr11P...	Banana	cytosol	38.33	43.5
Os02t0643000-01	Rice	plasma membrane	48.46	42.47
GSMUA_Achr8P11120_001	Banana	cytosol	51.1	41.43
PGSC0003DMT400067515	Potato	nucleus	39.65	40.91
CDY44556	Canola	cytosol, extracellular, plastid	18.06	40.2
PGSC0003DMT400076826	Potato	cytosol	10.57	40.0
PGSC0003DMT400052797	Potato	cytosol	37.89	40.0
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	51.54	39.26
HORVU7Hr1G071270.2	Barley	mitochondrion	48.02	36.95
Zm00001d036342_P001	Maize	cytosol	37.89	34.4
PGSC0003DMT400057834	Potato	cytosol	40.97	29.43
PGSC0003DMT400027619	Potato	cytosol	40.53	25.92
AT1G51270.3	Thale cress	cytosol	44.05	15.7

Protein Annotations

EntrezGene:102587524	Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M1BY72	InterPro:MSP_dom	PFAM:PF00635
EnsemblPlantsGene:PGSC0003DMG400021592	PGSC:PGSC0003DMG400021592	EnsemblPlants:PGSC0003DMT400055602	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000295D133	InterPro:VAP	RefSeq:XP_006357914.1
SEG:seg	:	:	:	:	:

Description

Vesicle-associated membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021592]

Coordinates

chr6:+:35930539..35936283

Molecular Weight (calculated)

25623.0 Da

IEP (calculated)

8.228

GRAVY (calculated)

-0.475

Length

227 amino acids

Sequence
(BLAST)

001: MTTEQLLLSI DPLDLKFTLE LNKSISTSFQ LINKTDNHVA FKVKTTNPRK YTVRPNSGIV LPRSRSNVTV TMQPQMELPP DMQCKDKFLV QSVIVDPGST
101: PKDINPDMFN KPGGNDVEEC KLKVIYVSPP RKPSPVPEDS EEGTSPTASD TDLQEHSEPQ DNSVKARDLI LRLMEERDSI LRQNAKLNRD LELLRHGRHE
201: RRTGVRLLYI LLVGLAGILL GFIVRNV

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.