Factsheet for Solyc06g034220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	92.51	92.51
Bra003313.1-P	Field mustard	cytosol	53.74	54.71
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	57.27	54.39
Solyc01g090910.2.1	Tomato	nucleus	55.51	54.08
CDX89063	Canola	cytosol, golgi, plasma membrane	55.95	53.14
CDX83400	Canola	cytosol, nucleus, plasma membrane	56.39	53.11
CDY41153	Canola	cytosol	55.51	52.94
CDY56247	Canola	cytosol	55.95	52.92
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	55.51	52.72
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	55.51	52.72
CDY48365	Canola	cytosol	55.51	52.72
CDY37029	Canola	cytosol, golgi, plasma membrane	55.51	52.72
KRH65384	Soybean	cytosol	55.95	52.7
CDX71796	Canola	cytosol	55.07	52.52
CDY57247	Canola	cytosol	55.51	52.5
CDY27392	Canola	cytosol, golgi, plasma membrane	55.07	52.3
Bra007547.1-P	Field mustard	cytosol	54.63	52.1
CDX67837	Canola	cytosol, golgi, plasma membrane	55.07	52.08
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	55.07	52.08
KRH76164	Soybean	endoplasmic reticulum	55.07	51.87
CDX95631	Canola	cytosol, golgi, plasma membrane	54.63	51.45
Solyc08g078690.2.1	Tomato	cytosol	50.22	51.35
Solyc10g018350.1.1	Tomato	cytosol	53.3	50.84
GSMUA_Achr1P20280_001	Banana	cytosol	45.81	48.6
Zm00001d017390_P001	Maize	cytosol	48.02	48.44
KXG31128	Sorghum	cytosol	48.02	48.44
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	50.66	48.12
Zm00001d051288_P001	Maize	cytosol	47.58	48.0
GSMUA_Achr5P20880_001	Banana	cytosol	50.22	47.7
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	47.58	47.37
Bra035442.1-P	Field mustard	cytosol	22.47	47.22
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	49.78	47.08
TraesCS6D01G220300.1	Wheat	cytosol	47.14	46.93
Os04t0534400-01	Rice	cytosol	51.1	46.4
Os08t0156700-01	Rice	plasma membrane	49.34	46.09
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	46.26	46.05
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	46.26	46.05
TraesCS2B01G385700.2	Wheat	cytosol	50.22	45.78
TraesCS2A01G368500.1	Wheat	cytosol	50.22	45.78
EES12559	Sorghum	cytosol	50.22	45.78
Zm00001d049553_P001	Maize	plasma membrane	48.9	45.49
HORVU2Hr1G091830.4	Barley	cytosol	49.78	45.38
TraesCS2D01G365300.2	Wheat	cytosol	49.78	45.38
EES14570	Sorghum	cytosol, nucleus, plasma membrane	48.02	44.67
TraesCS7A01G300700.1	Wheat	cytosol	46.7	43.62
TraesCS7D01G296400.1	Wheat	cytosol	46.7	43.62
GSMUA_Achr11P...	Banana	cytosol	37.0	42.0
CDY44556	Canola	cytosol, extracellular, plastid	18.5	41.18
GSMUA_Achr8P11120_001	Banana	cytosol	50.22	40.71
Os02t0643000-01	Rice	plasma membrane	46.26	40.54
Solyc08g078000.2.1	Tomato	nucleus	38.77	40.0
Solyc08g007200.2.1	Tomato	unclear	36.56	38.6
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	49.34	37.58
Solyc08g007390.2.1	Tomato	unclear	33.04	37.31
HORVU7Hr1G071270.2	Barley	mitochondrion	46.26	35.59
Zm00001d036342_P001	Maize	cytosol	37.89	34.4
Solyc01g098200.2.1	Tomato	cytosol	39.21	28.16
Solyc01g067720.2.1	Tomato	plastid	38.33	21.01
AT1G51270.3	Thale cress	cytosol	44.05	15.7

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:K4C4P6	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf	SUPFAM:SSF49354	EnsemblPlantsGene:Solyc06g034220.2
EnsemblPlants:Solyc06g034220.2.1	TMHMM:TMhelix	UniParc:UPI0002765B4F	InterPro:VAP	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:23958601..23964557

Molecular Weight (calculated)

25562.9 Da

IEP (calculated)

8.217

GRAVY (calculated)

-0.426

Length

227 amino acids

Sequence
(BLAST)

001: MTTEQLLLSI DPLDLKFPFE LNKPVSTAFQ LINKTDNHVA FKVKTTNPRK YTVRPNSGIV LPRSRSNVTV TMQPQMELPP GMQCKDKFLV QSVIVDPGST
101: AKDINPDMFN KSGVNDVEEC KLKVIYVSPP RKPSPVPEDS EEGTSPTASD SDLQEDSEPQ DNSIKARDLI LRLMEERDSI LRENAKLSRD LELLRHGRHE
201: RRTGVRLLYI LLVGLGSILL GFIVRKV

Best Arabidopsis Sequence Match ( AT3G60600.1 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.