Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032484 | Potato | cytosol, nucleus, plasma membrane | 67.57 | 70.75 |
| KRH57391 | Soybean | endoplasmic reticulum, mitochondrion | 70.27 | 64.73 |
| KRH04117 | Soybean | cytosol, nucleus, plasma membrane | 69.37 | 63.9 |
| KRH28066 | Soybean | cytosol | 51.35 | 63.69 |
| VIT_13s0106g00400.t01 | Wine grape | cytosol | 38.74 | 63.24 |
| KRH77373 | Soybean | endoplasmic reticulum | 66.67 | 61.41 |
| Solyc10g018350.1.1 | Tomato | cytosol | 65.32 | 60.92 |
| VIT_02s0154g00500.t01 | Wine grape | cytosol, nucleus, plasma membrane | 65.32 | 60.92 |
| Solyc01g090910.2.1 | Tomato | nucleus | 63.51 | 60.52 |
| Solyc08g007390.2.1 | Tomato | unclear | 52.25 | 57.71 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 59.01 | 54.58 |
| Solyc06g034220.2.1 | Tomato | nucleus | 51.35 | 50.22 |
| Solyc08g007200.2.1 | Tomato | unclear | 40.54 | 41.86 |
| Solyc08g078000.2.1 | Tomato | nucleus | 40.99 | 41.36 |
| Solyc01g098200.2.1 | Tomato | cytosol | 40.99 | 28.8 |
| Solyc01g067720.2.1 | Tomato | plastid | 42.34 | 22.71 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:K4CNM8 | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 |
| PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | EnsemblPlantsGene:Solyc08g078690.2 |
| EnsemblPlants:Solyc08g078690.2.1 | TMHMM:TMhelix | UniParc:UPI000276ACE4 | InterPro:VAP | SEG:seg | : |
Description
No Description!
Coordinates
chr8:+:62464259..62469466
Molecular Weight (calculated)
24547.9 Da
IEP (calculated)
9.163
GRAVY (calculated)
-0.345
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGELLKIE PLELKFPFEL KKQIYCSIHL SNNTEEHVAF KVKTTNPKKY CVRPNTGIVS PRSTSDVIVT MQAQKEAPSD MQCKDKFLLQ SVVATPGVAA
101: KDITQEMFNK EDGRVVDECK LKVIYLPTAQ PPFPVAEGSE EGSPPKESMK DNGHENGSEA KSVISRLMAE KAAALQQSNK LRQELELVKR DMTRSRRGGV
201: SFIPVVVVGL LGILLGYILK KS
101: KDITQEMFNK EDGRVVDECK LKVIYLPTAQ PPFPVAEGSE EGSPPKESMK DNGHENGSEA KSVISRLMAE KAAALQQSNK LRQELELVKR DMTRSRRGGV
201: SFIPVVVVGL LGILLGYILK KS
001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT
Arabidopsis Description
PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.