CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28066	Soybean	cytosol	71.78	96.65
KRH57391	Soybean	endoplasmic reticulum, mitochondrion	82.57	82.57
KRH04117	Soybean	cytosol, nucleus, plasma membrane	82.16	82.16
VIT_02s0154g00500.t01	Wine grape	cytosol, nucleus, plasma membrane	67.63	68.49
KRH65384	Soybean	cytosol	66.81	66.81
Solyc08g078690.2.1	Tomato	cytosol	61.41	66.67
KRH76164	Soybean	endoplasmic reticulum	65.98	65.98
PGSC0003DMT400032484	Potato	cytosol, nucleus, plasma membrane	57.68	65.57
VIT_13s0106g00400.t01	Wine grape	cytosol	36.1	63.97
KRH28185	Soybean	cytosol, golgi, nucleus	41.91	46.12
KRH04206	Soybean	cytosol	39.83	43.24
KRH57501	Soybean	plasma membrane	37.76	43.13
KRH77304	Soybean	plasma membrane, vacuole	41.91	40.56
KRH50932	Soybean	cytosol	46.06	37.63
KRH02189	Soybean	cytosol	45.64	37.29
KRH11275	Soybean	cytosol	39.42	34.17
KRG92793	Soybean	cytosol	39.83	19.96
KRH34006	Soybean	cytosol	41.49	18.87

Protein Annotations

EntrezGene:100798247	Gene3D:2.60.40.10	MapMan:20.7.1	EMBL:ACUP02000669	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G210100
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:K7K510
EnsemblPlants:KRH77373	ProteinID:KRH77373	ProteinID:KRH77373.1	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix
UniParc:UPI00023379F1	InterPro:VAP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:54149503..54152969

Molecular Weight (calculated)

26302.8 Da

IEP (calculated)

8.195

GRAVY (calculated)

-0.293

Length

241 amino acids

Sequence
(BLAST)

001: MTTGDLLSIE PLELKFLFEL KKQISCSLIL SNKTDSYIAF KVKTTNPKKY CVRPNTGVVM PQSACDVIVT MQAQKDAPAD MQCKDKFLLQ SVKVDDGTTA
101: KDITAEMFNK EVGHVVEECK LRVVYVSPTQ PPSPVPEGSE EGSSPRGSVS DNGNASGADS AAVARAFVER HEGPEKSAEA KALISRLAEE KNNAIQQNNK
201: LRQELDLLRR ESNKSRGGVS MVIVILIGLL GIIMGYLMKK N

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.