CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02189	Soybean	cytosol	66.19	62.37
KRH50932	Soybean	cytosol	65.47	61.69
VIT_05s0020g01970.t01	Wine grape	cytosol	52.16	49.49
KRH28066	Soybean	cytosol	28.78	44.69
KRH57391	Soybean	endoplasmic reticulum, mitochondrion	36.69	42.32
KRH04117	Soybean	cytosol, nucleus, plasma membrane	35.97	41.49
GSMUA_Achr8P21990_001	Banana	cytosol	44.24	40.86
KRH76164	Soybean	endoplasmic reticulum	35.25	40.66
KRH65384	Soybean	cytosol	35.25	40.66
GSMUA_Achr10P...	Banana	cytosol	43.53	40.33
KRH77373	Soybean	endoplasmic reticulum	34.17	39.42
KRH28185	Soybean	cytosol, golgi, nucleus	30.58	38.81
GSMUA_Achr3P08840_001	Banana	cytosol	33.09	38.33
PGSC0003DMT400027619	Potato	cytosol	48.92	38.31
KRH57501	Soybean	plasma membrane	27.7	36.49
KRH04206	Soybean	cytosol	28.78	36.04
KRH77304	Soybean	plasma membrane, vacuole	30.58	34.14
TraesCS3D01G462100.3	Wheat	cytosol	42.81	32.78
TraesCS3A01G467600.2	Wheat	cytosol	42.81	32.78
Os01t0936800-01	Rice	cytosol, plasma membrane	44.6	32.63
TraesCS3B01G511900.2	Wheat	cytosol	42.45	32.51
EES04183	Sorghum	cytosol	43.88	32.36
Solyc01g067720.2.1	Tomato	plastid	47.48	31.88
Zm00001d011904_P001	Maize	cytosol	43.88	31.2
Zm00001d042180_P002	Maize	cytosol	44.96	31.17
HORVU3Hr1G099730.5	Barley	cytosol	42.09	31.12
KXG21863	Sorghum	cytosol	39.21	30.11
Zm00001d010495_P002	Maize	cytosol	38.85	28.42
KRG92793	Soybean	cytosol	43.53	25.16
Os05t0373000-01	Rice	cytosol	42.81	24.95
KRH34006	Soybean	cytosol	43.88	23.02

Protein Annotations

EntrezGene:100816526	Gene3D:2.60.40.10	MapMan:20.7.1	EMBL:ACUP02009196	EMBL:BT093773	UniProt:C6T8H2
ncoils:Coil	EnsemblPlantsGene:GLYMA_15G098400	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	EnsemblPlants:KRH11275	ProteinID:KRH11275	ProteinID:KRH11275.1	InterPro:MSP_dom	PFAM:PF00635
PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF66	InterPro:PapD-like_sf	SUPFAM:SSF49354
TMHMM:TMhelix	UniParc:UPI0001B160A3	InterPro:VAP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:7651925..7654556

Molecular Weight (calculated)

31077.7 Da

IEP (calculated)

8.475

GRAVY (calculated)

-0.428

Length

278 amino acids

Sequence
(BLAST)

001: MATELLQIDP PQLTFTFELK KQSSCLVHLI NNNSSHHVAF KVKTTSPKKY CVRPTVGIVK PHGTCDFTVT MQAQRTAPPD LHCKDKFLVQ SAVVPKGTTE
101: DEISSDLFVK DSGRLVDEKK LRVVLINSPS SPVNGDLKQD PPSQMLPSLT AEKGMEAAQD MEEDGADKGT FPSTRSVEKV GDMKQVNDAV NLSFATKDSE
201: ELKSRLSIMD AKLREAEGTI MKLNEERRRN IREKDLLKQE LEMLKKKIKM KRAQEGFPLL FVCVVSIVSM AVGYYIHP

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.