Factsheet for Os01t0936800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G511900.2	Wheat	cytosol	66.58	69.7
TraesCS3D01G462100.3	Wheat	cytosol	66.32	69.42
TraesCS3A01G467600.2	Wheat	cytosol	66.05	69.15
EES04183	Sorghum	cytosol	68.16	68.7
Zm00001d011904_P001	Maize	cytosol	68.68	66.75
HORVU3Hr1G099730.5	Barley	cytosol	65.26	65.96
Zm00001d042180_P002	Maize	cytosol	67.37	63.84
GSMUA_Achr8P21990_001	Banana	cytosol	42.37	53.49
GSMUA_Achr10P...	Banana	cytosol	41.32	52.33
GSMUA_Achr3P08840_001	Banana	cytosol	31.58	50.0
VIT_05s0020g01970.t01	Wine grape	cytosol	37.37	48.46
VIT_14s0030g00730.t01	Wine grape	cytosol	42.11	47.62
Os02t0661900-02	Rice	cytosol	12.89	46.23
KRH02189	Soybean	cytosol	35.26	45.42
KRH50932	Soybean	cytosol	34.74	44.75
Os08t0155100-01	Rice	plasma membrane	27.89	44.73
KRH11275	Soybean	cytosol	32.63	44.6
Os08t0156700-01	Rice	plasma membrane	27.63	43.21
Solyc01g098200.2.1	Tomato	cytosol	35.79	43.04
PGSC0003DMT400057834	Potato	cytosol	35.26	42.41
Os04t0534400-01	Rice	cytosol	27.63	42.0
PGSC0003DMT400027619	Potato	cytosol	37.37	40.0
Os02t0643000-01	Rice	plasma membrane	25.26	37.07
Os04t0554200-02	Rice	cytosol, nucleus, plastid	23.68	36.89
Os10t0549100-01	Rice	plasma membrane	22.37	36.48
Os10t0507600-01	Rice	cytosol, plasma membrane	22.89	36.25
Os05t0373000-01	Rice	cytosol	44.47	35.43
Bra031641.1-P	Field mustard	cytosol	31.84	35.28
CDY06330	Canola	cytosol	31.84	35.28
Solyc01g067720.2.1	Tomato	plastid	38.16	35.02
CDX93534	Canola	cytosol	33.68	34.5
Bra018597.1-P	Field mustard	cytosol	33.42	34.23
CDY32136	Canola	cytosol	34.21	34.21
CDY31124	Canola	cytosol	34.21	34.12
CDX95029	Canola	cytosol	33.16	33.69
AT1G08820.3	Thale cress	cytosol	33.68	33.16
Bra030744.1-P	Field mustard	cytosol	34.21	33.08
Os02t0652550-00	Rice	cytosol	21.84	31.09
CDY22664	Canola	plasma membrane	32.11	28.77
Os04t0369000-01	Rice	cytosol, plasma membrane	10.26	28.47
KRG92793	Soybean	cytosol	34.74	27.44
KRH34006	Soybean	cytosol	35.26	25.28

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EntrezGene:4326527	EMBL:AK103322	ProteinID:BAD87304.1	ProteinID:BAF07243.1
ProteinID:BAS76107.1	ncoils:Coil	ProteinID:EEE55966.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	EnsemblPlantsGene:Os01g0936800	EnsemblPlants:Os01t0936800-01	PFAM:PF00635
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf	UniProt:Q5JMK3	SUPFAM:SSF49354
TMHMM:TMhelix	UniParc:UPI00004C292E	InterPro:VAP	RefSeq:XP_015620641.1	SEG:seg	:

Description

PapD-like domain containing protein. (Os01t0936800-01);Similar to VAP27-2. (Os01t0936800-02)

Coordinates

chr1:-:41117216..41122215

Molecular Weight (calculated)

42472.3 Da

IEP (calculated)

5.971

GRAVY (calculated)

-0.322

Length

380 amino acids

Sequence
(BLAST)

001: MGQDLAEIHP RELQFTFEVK KQSSCTVHLV NKSNEYVAFK VKTTSPKRYC VRPNTGVILP RSTCDFTVTM QAQRTAPPDM QLKDKFLVQT TVVPYGTSDE
101: DLVPSYFSKE SGRYIEESKL RVVLVSASHP FGEQPINGIP NTEAAVEVPS LKDTLNIKNE IPVAEKEVHS PLEEDPVVIP APPYPVKEAP ILREVPVHIS
201: PVRETSFLRE VPAPVSPVKE TPILREVPTP LKETPVILTE SPPPPTDTSS ITVESLHPFE QNLASLKESP LEETLPKAAV VLSEQGAVNV QSRQLCHVTE
301: DVQNLKSKLN GLEVKLEEAE KMIIKLREES RTTTQERDKL QQEMMFLRKK GTPRNQVGFP LLFVVYVALL GTSLGYLLRL

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.