Factsheet for Bra030744.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31124	Canola	cytosol	94.66	97.64
CDY32136	Canola	cytosol	92.62	95.79
Bra018597.1-P	Field mustard	cytosol	80.41	85.18
Bra031641.1-P	Field mustard	cytosol	68.7	78.72
AT1G08820.3	Thale cress	cytosol	75.06	76.42
VIT_14s0030g00730.t01	Wine grape	cytosol	40.97	47.92
GSMUA_Achr8P21990_001	Banana	cytosol	33.59	43.85
PGSC0003DMT400057834	Potato	cytosol	34.35	42.72
Solyc01g098200.2.1	Tomato	cytosol	33.84	42.09
GSMUA_Achr10P...	Banana	cytosol	32.06	42.0
Bra003313.1-P	Field mustard	cytosol	23.66	41.7
GSMUA_Achr3P08840_001	Banana	cytosol	25.45	41.67
Bra000978.1-P	Field mustard	cytosol	24.94	41.53
Bra007547.1-P	Field mustard	cytosol	24.68	40.76
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	24.68	40.42
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	24.43	40.17
Bra035442.1-P	Field mustard	cytosol	10.94	39.81
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	24.17	39.75
Bra022110.1-P	Field mustard	cytosol	21.12	38.07
Bra024958.1-P	Field mustard	cytosol	20.61	37.16
Bra022111.1-P	Field mustard	cytosol	20.1	35.91
Bra017499.1-P	Field mustard	cytosol	20.1	35.91
Os01t0936800-01	Rice	cytosol, plasma membrane	33.08	34.21
TraesCS3B01G511900.2	Wheat	cytosol	31.55	34.16
TraesCS3A01G467600.2	Wheat	cytosol	31.3	33.88
TraesCS3D01G462100.3	Wheat	cytosol	31.3	33.88
EES04183	Sorghum	cytosol	32.32	33.69
KRG92793	Soybean	cytosol	40.71	33.26
HORVU3Hr1G099730.5	Barley	cytosol	31.55	32.98
Zm00001d011904_P001	Maize	cytosol	32.32	32.48
Zm00001d042180_P002	Maize	cytosol	32.82	32.17
KRH34006	Soybean	cytosol	41.48	30.75
KXG21863	Sorghum	cytosol	28.24	30.66
Zm00001d010495_P002	Maize	cytosol	29.01	30.0
Os05t0373000-01	Rice	cytosol	29.01	23.9

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra030744	EnsemblPlants:Bra030744.1	EnsemblPlants:Bra030744.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4EPM4
InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf
SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI00025469A3	InterPro:VAP	:	:

Description

AT1G08820 (E=6e-151) VAP27-2 | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule

Coordinates

chrA08:+:20535134..20537491

Molecular Weight (calculated)

43872.9 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.450

Length

393 amino acids

Sequence
(BLAST)

001: MNMPLLDIQP RTLKFVVDLK KQSTCVVQLT NTTHLFVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFSVSA FGLIELYVTA VIMQAFKEPP PDMACKDKFL
101: IQSTAVPEET TDEDITASMF SKAEGKHIEE NKLRVTLVMA SDSPELSPIK GALKQESVFE DSIPKDRLHG QSETLPPQYE SEIVKEPPRM VGHDELKQPR
201: KGVMDFIEND IKATKGGGYD TSKMAKETES DPIKSHKDED AGRGIKPTHD LGTTTNMAMD LSGDQGFANG KTSAKSVTYP EEPKIHRDRD VVSQQKTDAQ
301: NSKALDEYKL VKDIEEMKLK VNALESKLKQ ADSTISKLME ERSISSQHRE SLQQELAEMR MKKIVKEVHI GFPLLFVCVV AFISIVIGYC LRT

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.