Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95029 | Canola | cytosol | 77.46 | 79.95 |
| Bra018597.1-P | Field mustard | cytosol | 76.68 | 79.78 |
| CDX93534 | Canola | cytosol | 76.68 | 79.78 |
| CDY32136 | Canola | cytosol | 76.94 | 78.16 |
| CDY31124 | Canola | cytosol | 76.42 | 77.43 |
| Bra031641.1-P | Field mustard | cytosol | 68.65 | 77.26 |
| CDY06330 | Canola | cytosol | 68.39 | 76.97 |
| Bra030744.1-P | Field mustard | cytosol | 76.42 | 75.06 |
| CDY22664 | Canola | plasma membrane | 68.65 | 62.5 |
| AT2G23830.1 | Thale cress | cytosol | 18.91 | 48.99 |
| VIT_14s0030g00730.t01 | Wine grape | cytosol | 39.12 | 44.94 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 27.72 | 44.77 |
| GSMUA_Achr8P21990_001 | Banana | cytosol | 33.42 | 42.86 |
| AT2G45140.1 | Thale cress | cytosol | 26.17 | 42.26 |
| Solyc01g098200.2.1 | Tomato | cytosol | 34.2 | 41.77 |
| PGSC0003DMT400057834 | Potato | cytosol | 33.94 | 41.46 |
| GSMUA_Achr10P... | Banana | cytosol | 31.61 | 40.67 |
| AT3G60600.1 | Thale cress | cytosol | 26.94 | 40.62 |
| GSMUA_Achr3P08840_001 | Banana | cytosol | 25.13 | 40.42 |
| AT5G47180.1 | Thale cress | cytosol | 21.5 | 37.73 |
| TraesCS3A01G467600.2 | Wheat | cytosol | 32.38 | 34.44 |
| TraesCS3B01G511900.2 | Wheat | cytosol | 32.38 | 34.44 |
| TraesCS3D01G462100.3 | Wheat | cytosol | 32.38 | 34.44 |
| KRG92793 | Soybean | cytosol | 42.75 | 34.3 |
| Os01t0936800-01 | Rice | cytosol, plasma membrane | 33.16 | 33.68 |
| HORVU3Hr1G099730.5 | Barley | cytosol | 32.38 | 33.24 |
| Zm00001d011904_P001 | Maize | cytosol | 33.42 | 32.99 |
| EES04183 | Sorghum | cytosol | 32.12 | 32.89 |
| Zm00001d042180_P002 | Maize | cytosol | 33.94 | 32.67 |
| KRH34006 | Soybean | cytosol | 43.52 | 31.7 |
| KXG21863 | Sorghum | cytosol | 28.24 | 30.11 |
| Zm00001d010495_P002 | Maize | cytosol | 29.27 | 29.74 |
| Os05t0373000-01 | Rice | cytosol | 29.79 | 24.11 |
| AT1G51270.3 | Thale cress | cytosol | 27.2 | 16.48 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | EntrezGene:837404 | UniProt:A0A178WBB7 | ProteinID:AAF99771.1 | ProteinID:AEE28352.1 |
| ProteinID:AEE28353.1 | EMBL:AK317489 | EMBL:AK317626 | ProteinID:ANM59286.1 | ProteinID:ANM59287.1 | ProteinID:ANM59288.1 |
| ArrayExpress:AT1G08820 | EnsemblPlantsGene:AT1G08820 | RefSeq:AT1G08820 | TAIR:AT1G08820 | RefSeq:AT1G08820-TAIR-G | EnsemblPlants:AT1G08820.3 |
| EMBL:AY074512 | EMBL:AY364004 | Unigene:At.42674 | UniProt:B9DHD7 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016032 |
| GO:GO:0046907 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom | RefSeq:NP_001031004.1 |
| RefSeq:NP_001321655.1 | RefSeq:NP_001321656.1 | RefSeq:NP_001321657.1 | RefSeq:NP_172359.2 | ProteinID:OAP15394.1 | PFAM:PF00635 |
| PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF45 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix |
| UniParc:UPI0000196BB9 | InterPro:VAP | Symbol:VAP27-2 | : | : | : |
Description
PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
Coordinates
chr1:-:2821354..2825481
Molecular Weight (calculated)
43271.9 Da
IEP (calculated)
7.007
GRAVY (calculated)
-0.513
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.