Factsheet for Solyc01g098200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057834	Potato	cytosol	93.35	93.35
VIT_14s0030g00730.t01	Wine grape	cytosol	49.37	46.43
GSMUA_Achr10P...	Banana	cytosol	42.09	44.33
Solyc01g090910.2.1	Tomato	nucleus	32.59	44.21
Solyc10g018350.1.1	Tomato	cytosol	32.91	43.7
GSMUA_Achr8P21990_001	Banana	cytosol	41.46	43.52
Solyc08g078690.2.1	Tomato	cytosol	28.8	40.99
Solyc06g034220.2.1	Tomato	nucleus	28.16	39.21
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	29.11	38.33
Solyc08g078000.2.1	Tomato	nucleus	26.58	38.18
GSMUA_Achr3P08840_001	Banana	cytosol	28.8	37.92
CDX93534	Canola	cytosol	43.04	36.66
Bra018597.1-P	Field mustard	cytosol	42.72	36.39
EES04183	Sorghum	cytosol	43.35	36.34
CDX95029	Canola	cytosol	42.72	36.1
CDY06330	Canola	cytosol	38.92	35.86
Bra031641.1-P	Field mustard	cytosol	38.92	35.86
Solyc08g007200.2.1	Tomato	unclear	24.37	35.81
Os01t0936800-01	Rice	cytosol, plasma membrane	43.04	35.79
TraesCS3B01G511900.2	Wheat	cytosol	40.19	34.99
CDY32136	Canola	cytosol	41.77	34.74
TraesCS3D01G462100.3	Wheat	cytosol	39.87	34.71
TraesCS3A01G467600.2	Wheat	cytosol	39.87	34.71
CDY31124	Canola	cytosol	41.46	34.38
Zm00001d011904_P001	Maize	cytosol	42.41	34.27
AT1G08820.3	Thale cress	cytosol	41.77	34.2
KXG21863	Sorghum	cytosol	38.92	33.98
Bra030744.1-P	Field mustard	cytosol	42.09	33.84
Zm00001d042180_P002	Maize	cytosol	42.41	33.42
HORVU3Hr1G099730.5	Barley	cytosol	39.56	33.24
Zm00001d010495_P002	Maize	cytosol	38.61	32.11
Solyc01g067720.2.1	Tomato	plastid	41.14	31.4
Solyc08g007390.2.1	Tomato	unclear	19.62	30.85
CDY22664	Canola	plasma membrane	38.61	28.77
KRG92793	Soybean	cytosol	42.09	27.65
Os05t0373000-01	Rice	cytosol	40.51	26.83
KRH34006	Soybean	cytosol	43.99	26.23

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005886	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:K4B0K7	InterPro:MSP_dom	PFAM:PF00635
PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF45	InterPro:PapD-like_sf	SUPFAM:SSF49354
EnsemblPlantsGene:Solyc01g098200.2	EnsemblPlants:Solyc01g098200.2.1	TMHMM:TMhelix	UniParc:UPI00027685CC	InterPro:VAP	SEG:seg

Description

Vesicle-associated protein 2-2 [Source:Projected from Arabidopsis thaliana (AT1G08820) UniProtKB/Swiss-Prot;Acc:B9DHD7]

Coordinates

chr1:-:88787856..88794599

Molecular Weight (calculated)

35835.7 Da

IEP (calculated)

7.931

GRAVY (calculated)

-0.709

Length

316 amino acids

Sequence
(BLAST)

001: MYSDLVEIAP RELQFTFEPK KQSSCTIRLI NKSQNHVAFK VKTTSPKKYC VRPNTGTIKP RASCDFTVTM QAQKAPPPDM ACKDKFLVQC TVVAEETVEE
101: DITSAMFSKD DGKYVQENKM RVVLISPPGS SILSPINVEH SDLPSNIDSP REDQVHGNEN ISSHQEGDVN GVHNHNGRYK EALTRDQVNP LNQNTQKELD
201: ENAKEFRKEN ANMQMGGKHA QLETRKHDEE MDLVKDVTSM KSKITELERK LSEAKDTISK LTEERKSTAQ ERESLQRELV MLTSKKGGRK VRVGFPLLYV
301: VTVAFISMVF GYLLHY

Best Arabidopsis Sequence Match ( AT1G08820.2 )
(BLAST)

001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT

Arabidopsis Description

PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.