Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21863 | Sorghum | cytosol | 46.12 | 60.77 |
| Zm00001d010495_P002 | Maize | cytosol | 43.61 | 54.74 |
| GSMUA_Achr8P21990_001 | Banana | cytosol | 29.35 | 46.51 |
| GSMUA_Achr10P... | Banana | cytosol | 28.3 | 45.0 |
| Os01t0936800-01 | Rice | cytosol, plasma membrane | 35.43 | 44.47 |
| Os02t0661900-02 | Rice | cytosol | 9.64 | 43.4 |
| KRH11275 | Soybean | cytosol | 24.95 | 42.81 |
| Os08t0155100-01 | Rice | plasma membrane | 20.75 | 41.77 |
| GSMUA_Achr3P08840_001 | Banana | cytosol | 20.96 | 41.67 |
| VIT_05s0020g01970.t01 | Wine grape | cytosol | 25.58 | 41.64 |
| KRH50932 | Soybean | cytosol | 25.58 | 41.36 |
| Os04t0534400-01 | Rice | cytosol | 21.59 | 41.2 |
| KRH02189 | Soybean | cytosol | 25.37 | 41.02 |
| PGSC0003DMT400057834 | Potato | cytosol | 26.83 | 40.51 |
| Solyc01g098200.2.1 | Tomato | cytosol | 26.83 | 40.51 |
| Os08t0156700-01 | Rice | plasma membrane | 20.55 | 40.33 |
| VIT_14s0030g00730.t01 | Wine grape | cytosol | 27.46 | 38.99 |
| Os10t0549100-01 | Rice | plasma membrane | 17.82 | 36.48 |
| Os02t0643000-01 | Rice | plasma membrane | 19.71 | 36.29 |
| Os10t0507600-01 | Rice | cytosol, plasma membrane | 18.24 | 36.25 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 17.82 | 34.84 |
| Bra031641.1-P | Field mustard | cytosol | 24.11 | 33.53 |
| CDY06330 | Canola | cytosol | 24.11 | 33.53 |
| PGSC0003DMT400027619 | Potato | cytosol | 24.95 | 33.52 |
| CDX93534 | Canola | cytosol | 25.16 | 32.34 |
| Bra018597.1-P | Field mustard | cytosol | 24.95 | 32.08 |
| CDX95029 | Canola | cytosol | 24.95 | 31.82 |
| Os02t0652550-00 | Rice | cytosol | 17.19 | 30.71 |
| AT1G08820.3 | Thale cress | cytosol | 24.11 | 29.79 |
| CDY31124 | Canola | cytosol | 23.48 | 29.4 |
| Os04t0369000-01 | Rice | cytosol, plasma membrane | 8.39 | 29.2 |
| Bra030744.1-P | Field mustard | cytosol | 23.9 | 29.01 |
| CDY32136 | Canola | cytosol | 23.06 | 28.95 |
| Solyc01g067720.2.1 | Tomato | plastid | 24.32 | 28.02 |
| CDY22664 | Canola | plasma membrane | 23.9 | 26.89 |
| KRG92793 | Soybean | cytosol | 24.74 | 24.53 |
| KRH34006 | Soybean | cytosol | 24.53 | 22.08 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | EntrezGene:4338598 | ProteinID:AAT58835.1 | EMBL:AK102012 | ProteinID:BAF17279.1 |
| ProteinID:BAS93707.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | EnsemblPlantsGene:Os05g0373000 | EnsemblPlants:Os05t0373000-01 | PFAM:PF00635 | PFscan:PS50202 |
| PANTHER:PTHR10809 | PANTHER:PTHR10809:SF89 | InterPro:PapD-like_sf | UniProt:Q6I5Q0 | SUPFAM:SSF49354 | TMHMM:TMhelix |
| UniParc:UPI00003B33C9 | InterPro:VAP | RefSeq:XP_015640777.1 | SEG:seg | : | : |
Description
PapD-like domain containing protein. (Os05t0373000-01)
Coordinates
chr5:-:17965061..17970698
Molecular Weight (calculated)
53057.7 Da
IEP (calculated)
6.207
GRAVY (calculated)
-0.184
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVDFGLVE IHPGEIRFEF EVKKKSSCYV CLVNKSEEYV AFKVKTTSPK RYCVRPNVGV ILPRATCVFT VIMQAQMIAP PDLQIRDKFL VQTTVVPFGT
101: ADEDIAPAFF SKEVGRYIEE NKLRVVLVSA TQLEEQQLIA GVPSAKTGVE VRVAKETLNI ESEASNVMNE VHHSLKTNFP PLRENPATLN EMPFPVKQTT
201: ILAPSKEVPA ISAESAHHWK ETPAESLFSS NAVHHSLKTS FPPLRENPAT LNEMPFPVKQ TTILPPSEEV PAISAESGHH WKETPAESLF ATNALPHSLK
301: TSCLLRENPA ILNEIPFPVR QTTILPPLKE VPVISAESAH HWKETLNVSL ESHFSSTETN VVSSECPETL ENTSPSKEFA ILRDTLVNAE NLHYVTDDVQ
401: NLMTKLSNLE AKLEEAESVI VKLREDTRTT IRERDKLKHE MVVLTRKGAS RSQAGFPLLF VVYMAILGAS LGYLLHL
101: ADEDIAPAFF SKEVGRYIEE NKLRVVLVSA TQLEEQQLIA GVPSAKTGVE VRVAKETLNI ESEASNVMNE VHHSLKTNFP PLRENPATLN EMPFPVKQTT
201: ILAPSKEVPA ISAESAHHWK ETPAESLFSS NAVHHSLKTS FPPLRENPAT LNEMPFPVKQ TTILPPSEEV PAISAESGHH WKETPAESLF ATNALPHSLK
301: TSCLLRENPA ILNEIPFPVR QTTILPPLKE VPVISAESAH HWKETLNVSL ESHFSSTETN VVSSECPETL ENTSPSKEFA ILRDTLVNAE NLHYVTDDVQ
401: NLMTKLSNLE AKLEEAESVI VKLREDTRTT IRERDKLKHE MVVLTRKGAS RSQAGFPLLF VVYMAILGAS LGYLLHL
001: MNMPLLDIQP RTLQFAVDLK KQTSCVVQLT NTTHHYVAFK VKTTSPKKYC VRPNVGVVAP KSTCEFTVIM QAFKEPPPDM VCKDKFLIQS TAVSAETTDE
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT
101: DITASMFSKA EGKHIEENKL RVTLVPPSDS PELSPINTPK QGAVFEDSIL KDRLYSQSET LAPPQYEGEI VKEPRMVGHD ELKAADNAKE LKTPKMATVD
201: FVEDRYTAND LKATKDSYDS SRMAKETGFD PIRSHKDADD GRAIKATTNL DAPMKKAMDL PRDQGFTNGI AVDSEPKISK ERDVVQLQKT DGQNVRGLDE
301: LKLVKDIEEM KLKVDALESK LKQADSTISK LMEERSISSQ HRQSLQHELA ELRTKKIVKE VHNGFPLLYV CVVAFIAYVI GHFLRT
Arabidopsis Description
PVA22VAP27-2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.