Factsheet for Os04t0554200-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G412000.1	Wheat	cytosol, plastid	72.95	73.55
TraesCS2D01G409200.1	Wheat	cytosol, plastid	72.54	73.14
TraesCS2B01G430600.1	Wheat	cytosol, plastid	72.54	73.14
KXG26858	Sorghum	cytosol, plastid	70.9	70.9
Os02t0661900-02	Rice	cytosol	27.05	62.26
HORVU2Hr1G097220.19	Barley	plastid	60.66	59.92
GSMUA_Achr7P07100_001	Banana	cytosol	50.41	51.68
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	49.59	50.84
Bra000978.1-P	Field mustard	cytosol	47.54	49.15
CDX91914	Canola	cytosol	47.54	49.15
CDX74330	Canola	cytosol	46.72	48.31
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	46.72	47.7
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	46.72	47.7
PGSC0003DMT400066797	Potato	cytosol	45.49	46.25
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	45.08	45.83
Os08t0155100-01	Rice	plasma membrane	41.8	43.04
Os04t0534400-01	Rice	cytosol	42.21	41.2
Os08t0156700-01	Rice	plasma membrane	39.34	39.51
Os02t0643000-01	Rice	plasma membrane	36.89	34.75
Solyc08g007390.2.1	Tomato	unclear	26.23	31.84
Os10t0549100-01	Rice	plasma membrane	30.33	31.76
Os10t0507600-01	Rice	cytosol, plasma membrane	29.92	30.42
Os04t0369000-01	Rice	cytosol, plasma membrane	16.39	29.2
Os02t0652550-00	Rice	cytosol	30.74	28.09
Os01t0936800-01	Rice	cytosol, plasma membrane	36.89	23.68
Os05t0373000-01	Rice	cytosol	34.84	17.82

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EntrezGene:4336613	ProteinID:BAF15424.1	ProteinID:BAS90410.1	ProteinID:CAE01696.2
ProteinID:EAZ31579.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:MSP_dom	EnsemblPlantsGene:Os04g0554200	EnsemblPlants:Os04t0554200-02	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202
PANTHER:PTHR10809	PANTHER:PTHR10809:SF54	InterPro:PapD-like_sf	UniProt:Q7XT32	SUPFAM:SSF49354	TMHMM:TMhelix
UniParc:UPI00001B0D3F	InterPro:VAP	RefSeq:XP_015634606.1	SEG:seg	:	:

Description

Similar to OSIGBa0143N19.13 protein. (Os04t0554200-01);PapD-like domain containing protein. (Os04t0554200-02)

Coordinates

chr4:+:27732827..27735793

Molecular Weight (calculated)

27462.1 Da

IEP (calculated)

7.007

GRAVY (calculated)

-0.266

Length

244 amino acids

Sequence
(BLAST)

001: MSNTLLRVHP SELKIPYEYK RKRSCCMQLT NKTNQYVAFK VKTTNPRKYS VRHACGILPP RSSCDITVTM QAPVEMLSDY HCKDKFLVQS VAVGYGATMR
101: DFVPELFTKA PGRVIEEFKL RVVYVAANPP SPVPEEEEEE EEDASPQSEV MSHGVKMTSV FDAVTVSTLT DRSADKVSSA EGVSVESMLV AEREYPVEEN
201: QKLQQQMELL RAARSSQQGF SAMFVLLVFM SSVCIGHFMK QIKV

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.