Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066797 | Potato | cytosol | 73.22 | 72.92 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 72.38 | 72.08 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 69.46 | 69.46 |
| GSMUA_Achr1P20230_001 | Banana | cytosol | 68.2 | 68.78 |
| Bra000978.1-P | Field mustard | cytosol | 67.78 | 68.64 |
| CDX91914 | Canola | cytosol | 67.78 | 68.64 |
| CDX74330 | Canola | cytosol | 66.95 | 67.8 |
| GSMUA_Achr1P04220_001 | Banana | cytosol, nucleus, plasma membrane | 65.69 | 65.97 |
| Os08t0155100-01 | Rice | plasma membrane | 64.85 | 65.4 |
| GSMUA_Achr6P36770_001 | Banana | cytosol | 56.9 | 65.07 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 64.02 | 64.02 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 64.44 | 63.9 |
| GSMUA_Achr7P07100_001 | Banana | cytosol | 63.18 | 63.45 |
| TraesCS7A01G301500.1 | Wheat | cytosol, golgi, plasma membrane | 62.76 | 63.03 |
| KXG24454 | Sorghum | cytosol | 63.18 | 62.66 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 61.92 | 62.18 |
| TraesCS7B01G201800.1 | Wheat | cytosol, golgi, plasma membrane | 61.92 | 62.18 |
| TraesCS7D01G296900.1 | Wheat | cytosol, golgi, plasma membrane | 61.51 | 61.76 |
| Os02t0661900-02 | Rice | cytosol | 27.2 | 61.32 |
| GSMUA_Achr7P06650_001 | Banana | cytosol | 54.81 | 60.65 |
| VIT_02s0154g00500.t01 | Wine grape | cytosol, nucleus, plasma membrane | 60.25 | 60.5 |
| VIT_13s0106g00400.t01 | Wine grape | cytosol | 33.89 | 59.56 |
| GSMUA_Achr1P05960_001 | Banana | cytosol, golgi, plasma membrane | 57.32 | 57.08 |
| Solyc08g007390.2.1 | Tomato | unclear | 44.77 | 53.23 |
| HORVU6Hr1G063580.1 | Barley | cytosol | 48.54 | 49.57 |
| TraesCS6B01G277000.1 | Wheat | cytosol | 47.7 | 48.72 |
| TraesCS6A01G247700.1 | Wheat | cytosol | 47.28 | 48.29 |
| TraesCS6D01G229800.1 | Wheat | cytosol | 47.28 | 48.29 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 47.7 | 46.72 |
| TraesCS2D01G409200.1 | Wheat | cytosol, plastid | 46.03 | 45.45 |
| KXG26858 | Sorghum | cytosol, plastid | 46.03 | 45.08 |
| TraesCS2B01G430600.1 | Wheat | cytosol, plastid | 45.19 | 44.63 |
| TraesCS2A01G412000.1 | Wheat | cytosol, plastid | 44.77 | 44.21 |
| EES07504 | Sorghum | plastid | 48.95 | 43.98 |
| Zm00001d051383_P001 | Maize | cytosol, plastid | 46.86 | 42.59 |
| VIT_05s0020g01970.t01 | Wine grape | cytosol | 50.63 | 41.3 |
| HORVU2Hr1G097220.19 | Barley | plastid | 41.84 | 40.49 |
| VIT_14s0030g00730.t01 | Wine grape | cytosol | 47.28 | 33.63 |
| VIT_00s0287g00080.t01 | Wine grape | extracellular | 27.62 | 18.97 |
Protein Annotations
| EntrezGene:100253897 | wikigene:100253897 | Gene3D:2.60.40.10 | MapMan:20.7.1 | ProteinID:CBI38880 | ProteinID:CBI38880.3 |
| ncoils:Coil | UniProt:D7U7V1 | EMBL:FN596739 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | EntrezGene:LOC100253897 | wikigene:LOC100253897 | InterPro:MSP_dom | PFAM:PF00635 |
| PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF43 | InterPro:PapD-like_sf | SUPFAM:SSF49354 |
| TIGR:TC56330 | TMHMM:TMhelix | UniParc:UPI00015CA39D | InterPro:VAP | ArrayExpress:VIT_15s0048g00600 | EnsemblPlantsGene:VIT_15s0048g00600 |
| EnsemblPlants:VIT_15s0048g00600.t01 | unigene:Vvi.3179 | RefSeq:XP_002280265 | RefSeq:XP_002280265.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr15:+:14748556..14759052
Molecular Weight (calculated)
26322.8 Da
IEP (calculated)
8.715
GRAVY (calculated)
-0.281
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTGDLLNIH PTELKFPFEL KKQSSCSLQL TNKTDQYVAF KVKTTNPKKY CVRPNTGVVL PGATCNVTVT MQAQKEAPPD MQCKDKFLLQ SVVAPTAATA
101: KDITTEMFNK VDGKVVEEFK LRVVYIPANP PSPVPEGSEE GSSPRASVHE NGNQNTSLFC TVKGSPEEAK EEALEAWSMV TKLTEERASA LQQNQKLRQE
201: LELVRKEISK SRAGGISLFF VVVLVGLIGI LLGYFVKRT
101: KDITTEMFNK VDGKVVEEFK LRVVYIPANP PSPVPEGSEE GSSPRASVHE NGNQNTSLFC TVKGSPEEAK EEALEAWSMV TKLTEERASA LQQNQKLRQE
201: LELVRKEISK SRAGGISLFF VVVLVGLIGI LLGYFVKRT
001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
Arabidopsis Description
PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.