Factsheet for HORVU6Hr1G063580.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G247700.1	Wheat	cytosol	95.73	95.73
TraesCS6B01G277000.1	Wheat	cytosol	95.3	95.3
TraesCS6D01G229800.1	Wheat	cytosol	94.44	94.44
Os02t0661900-02	Rice	cytosol	35.04	77.36
EES07504	Sorghum	plastid	64.53	56.77
Zm00001d051383_P001	Maize	cytosol, plastid	63.25	56.27
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	52.56	51.68
GSMUA_Achr7P07100_001	Banana	cytosol	50.85	50.0
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	49.57	48.54
Bra000978.1-P	Field mustard	cytosol	48.29	47.88
CDX91914	Canola	cytosol	48.29	47.88
CDX74330	Canola	cytosol	47.44	47.03
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	47.44	46.44
PGSC0003DMT400066797	Potato	cytosol	47.44	46.25
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	47.01	45.83
HORVU2Hr1G097220.19	Barley	plastid	47.44	44.94
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	42.31	41.6
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	40.17	41.23
HORVU2Hr1G091830.4	Barley	cytosol	43.59	40.96
Solyc08g007390.2.1	Tomato	unclear	29.91	34.83
HORVU7Hr1G071270.2	Barley	mitochondrion	40.17	31.86
HORVU6Hr1G062050.9	Barley	mitochondrion	35.9	28.87
HORVU3Hr1G099730.5	Barley	cytosol	34.19	21.28
HORVU2Hr1G003640.7	Barley	cytosol	17.09	19.05
HORVU3Hr1G006600.1	Barley	cytosol	18.8	6.19
HORVU5Hr1G012420.3	Barley	nucleus	16.67	3.96
HORVU6Hr1G011350.2	Barley	cytosol	0.85	0.16

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EMBL:AK369589	ncoils:Coil	UniProt:F2E0B8	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:HORVU6Hr1G063580	EnsemblPlants:HORVU6Hr1G063580.1	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF51
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI00020078E2	InterPro:VAP	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E0B8]

Coordinates

chrchr6H:-:428805562..428811669

Molecular Weight (calculated)

26403.8 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.396

Length

234 amino acids

Sequence
(BLAST)

001: MSNTLLRIYP SELKMPFELK KSNSGCIELV NKTDERVAFK VKTTNPKKYA VRPTSGIVPP GGSCGITITM QAPKEIPQDY QCKDKFLIQS VVVQEGVTHK
101: DIVPEMFGRA PGRVVEEFKL RVVYIPANPP SPVPEGDEEE IADMEVDHEV FRQSMIDAAS RQEYASGPQA SHDEDASTVK SEVVKYVAEN KKLQQELERL
201: SERRQSLRGF SQTFVLFVFM LSVLVGYWMT GRRV

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.