CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051383_P001	Maize	cytosol, plastid	84.59	85.55
Os02t0661900-02	Rice	cytosol	29.32	73.58
TraesCS6D01G229800.1	Wheat	cytosol	57.14	64.96
TraesCS6B01G277000.1	Wheat	cytosol	57.14	64.96
TraesCS6A01G247700.1	Wheat	cytosol	57.14	64.96
HORVU6Hr1G063580.1	Barley	cytosol	56.77	64.53
KXG26858	Sorghum	cytosol, plastid	45.86	50.0
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	43.98	48.95
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	43.61	48.74
GSMUA_Achr7P07100_001	Banana	cytosol	43.23	48.32
Bra000978.1-P	Field mustard	cytosol	40.6	45.76
CDX91914	Canola	cytosol	40.6	45.76
CDX74330	Canola	cytosol	40.23	45.34
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	40.6	45.19
KXG24454	Sorghum	cytosol	40.23	44.4
PGSC0003DMT400066797	Potato	cytosol	39.85	44.17
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	39.47	43.75
KXG31128	Sorghum	cytosol	35.71	42.22
EES14570	Sorghum	cytosol, nucleus, plasma membrane	37.97	41.39
EES12559	Sorghum	cytosol	38.35	40.96
EER91402	Sorghum	cytosol	36.84	36.03
Solyc08g007390.2.1	Tomato	unclear	24.81	32.84
EES05798	Sorghum	plastid	31.58	25.93
OQU79125	Sorghum	cytosol	17.67	24.48
KXG21863	Sorghum	cytosol	33.08	24.31
EES04183	Sorghum	cytosol	31.58	22.28

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EntrezGene:8073947	UniProt:C5Y1H0	ncoils:Coil	EnsemblPlants:EES07504
ProteinID:EES07504	ProteinID:EES07504.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF51	InterPro:PapD-like_sf	EnsemblPlantsGene:SORBI_3004G293000	SUPFAM:SSF49354	unigene:Sbi.11648	TMHMM:TMhelix
UniParc:UPI0001A86039	InterPro:VAP	RefSeq:XP_002454528.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:63334242..63337763

Molecular Weight (calculated)

29339.9 Da

IEP (calculated)

6.308

GRAVY (calculated)

-0.500

Length

266 amino acids

Sequence
(BLAST)

001: MSNTLLRVCP SDLKMPFELK KHNSACLELI NKTDQWVAFK VKTTNPRKYA VRPASGVVPP RGSCGITITM QAPKEIPPDY YCKDKFLVQS IAAEVGTTQK
101: DIVPGMFSKA PGKLVEEFKV RVVYVPANPP SPVPEETEEE DGSLDSDVDH EVGRPSTSNS ATGQGHTLRS RASDDEDDST SKLELESRYA EENKKMQKEL
201: AGPFKDDSVS KLELESRYAE ENKKIQKELD LLRKTKASAG GFSATFVLLV FLLGSLLGYL MFGSKA

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.