Factsheet for GSMUA_Achr1P04220_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 1
plasma membrane 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P07100_001	Banana	cytosol	78.99	78.99
GSMUA_Achr1P20230_001	Banana	cytosol	65.97	66.24
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	65.97	65.69
GSMUA_Achr6P36770_001	Banana	cytosol	55.46	63.16
Os02t0661900-02	Rice	cytosol	27.73	62.26
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	61.76	61.51
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	60.92	60.67
PGSC0003DMT400066797	Potato	cytosol	60.92	60.42
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	60.5	60.0
Bra000978.1-P	Field mustard	cytosol	58.4	58.9
CDX91914	Canola	cytosol	58.4	58.9
CDX74330	Canola	cytosol	57.98	58.47
GSMUA_Achr7P06650_001	Banana	cytosol	52.94	58.33
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	58.82	58.33
GSMUA_Achr5P20880_001	Banana	cytosol	56.3	56.07
HORVU6Hr1G063580.1	Barley	cytosol	51.68	52.56
GSMUA_Achr1P20280_001	Banana	cytosol	47.06	52.34
TraesCS2D01G409200.1	Wheat	cytosol, plastid	52.94	52.07
TraesCS6B01G277000.1	Wheat	cytosol	50.84	51.71
TraesCS2B01G430600.1	Wheat	cytosol, plastid	52.52	51.65
TraesCS2A01G412000.1	Wheat	cytosol, plastid	52.52	51.65
TraesCS6A01G247700.1	Wheat	cytosol	50.42	51.28
KXG26858	Sorghum	cytosol, plastid	52.52	51.23
TraesCS6D01G229800.1	Wheat	cytosol	50.0	50.85
Os04t0554200-02	Rice	cytosol, nucleus, plastid	50.84	49.59
GSMUA_Achr11P...	Banana	cytosol	41.18	49.0
GSMUA_Achr8P11120_001	Banana	cytosol	54.2	46.07
Solyc08g007390.2.1	Tomato	unclear	38.24	45.27
HORVU2Hr1G097220.19	Barley	plastid	46.64	44.94
Zm00001d051383_P001	Maize	cytosol, plastid	49.16	44.49
EES07504	Sorghum	plastid	48.74	43.61
GSMUA_Achr11P...	Banana	cytosol	37.4	38.7
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	35.29	36.05
GSMUA_Achr8P21990_001	Banana	cytosol	44.12	34.88
GSMUA_Achr3P08840_001	Banana	cytosol	34.03	33.75
GSMUA_Achr10P...	Banana	cytosol	42.44	33.67

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr1G04220_001
EnsemblPlants:GSMUA_Achr1P04220_001	EnsemblPlants:GSMUA_Achr1T04220_001	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0RWY0
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0002955593	InterPro:VAP	SEG:seg

Description

MSP domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G04220_001]

Coordinates

chr1:+:3511418..3515356

Molecular Weight (calculated)

26400.8 Da

IEP (calculated)

7.555

GRAVY (calculated)

-0.325

Length

238 amino acids

Sequence
(BLAST)

001: MIGGGLLKIH PSELKLPFEV KKQSSCCMQL TNKTDHYVAF KVKTTSPKKY SVRPNMGVVL PKSTISITVT MQAHKEAPPD LQCKDKFLVQ SVVADDGATT
101: KDITAEMFNK APGKDVEEFK LRVVYIPANP PSPVPEESEE GISPRSSVLE NETQSSTLFD AVSRSFNEAS TEQSHEEELI ISKLTEEKNH AIQQNKKLRQ
201: ELELLSKQSR KSSGGFSIMF IVIVAILGVI FGYIIKET

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.