Factsheet for GSMUA_Achr1P05960_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20230_001	Banana	cytosol	70.83	71.73
GSMUA_Achr7P06650_001	Banana	cytosol	60.0	66.67
GSMUA_Achr6P36770_001	Banana	cytosol	57.92	66.51
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	59.17	59.66
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	58.75	59.24
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	58.33	58.82
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	58.33	58.82
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	58.33	58.82
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	57.08	57.32
GSMUA_Achr7P07100_001	Banana	cytosol	56.25	56.72
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	56.67	56.67
PGSC0003DMT400066797	Potato	cytosol	56.67	56.67
KXG24454	Sorghum	cytosol	55.83	55.6
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	55.42	55.19
Os08t0155100-01	Rice	plasma membrane	54.17	54.85
CDX91914	Canola	cytosol	53.33	54.24
Bra000978.1-P	Field mustard	cytosol	53.33	54.24
GSMUA_Achr1P20280_001	Banana	cytosol	48.33	54.21
CDX74330	Canola	cytosol	52.92	53.81
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	53.33	53.56
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	53.33	53.56
GSMUA_Achr5P20880_001	Banana	cytosol	52.08	52.3
GSMUA_Achr11P...	Banana	cytosol	40.83	49.0
GSMUA_Achr8P11120_001	Banana	cytosol	49.58	42.5
Solyc08g007390.2.1	Tomato	unclear	34.58	41.29
GSMUA_Achr11P...	Banana	cytosol	35.0	36.52
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	34.17	35.19
GSMUA_Achr3P08840_001	Banana	cytosol	33.75	33.75
GSMUA_Achr8P21990_001	Banana	cytosol	41.25	32.89
GSMUA_Achr10P...	Banana	cytosol	39.17	31.33

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr1G05960_001
EnsemblPlants:GSMUA_Achr1P05960_001	EnsemblPlants:GSMUA_Achr1T05960_001	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0RXF4
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0002955C02	InterPro:VAP	SEG:seg

Description

MSP domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G05960_001]

Coordinates

chr1:-:4841950..4846243

Molecular Weight (calculated)

26662.7 Da

IEP (calculated)

5.738

GRAVY (calculated)

-0.415

Length

240 amino acids

Sequence
(BLAST)

001: MSQGELNDGG LLDIQPSELR FAFELKKQSL CSFQLTNKTD QCVAFKVKTT NPKKYCVRPN AGIISPKSSC DVTVTMQAQK EAPHDMQCKD KFLLQSVITE
101: HGAATTDITA EMFNREPGKL VEEFKLRVTY VMASPPSPVS EEQQEGSSPR SSTFEDGAQS LQTQDSASLL KEPSKENSSE AFAMILKLTE EKNNAIAQNQ
201: KLQQEVDLLN SEVNRHHMFF VVVGAVLAAL IGYIIKKSYY

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [cytosol,golgi,peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.