Factsheet for GSMUA_Achr6P36770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20230_001	Banana	cytosol	78.47	69.2
GSMUA_Achr7P06650_001	Banana	cytosol	66.03	63.89
GSMUA_Achr1P05960_001	Banana	cytosol, golgi, plasma membrane	66.51	57.92
TraesCS7A01G301500.1	Wheat	cytosol, golgi, plasma membrane	65.07	57.14
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	65.07	56.9
TraesCS7B01G201800.1	Wheat	cytosol, golgi, plasma membrane	64.11	56.3
HORVU0Hr1G021390.2	Barley	cytosol, golgi, plasma membrane	64.11	56.3
TraesCS7D01G296900.1	Wheat	cytosol, golgi, plasma membrane	63.16	55.46
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	63.16	55.46
GSMUA_Achr7P07100_001	Banana	cytosol	62.2	54.62
PGSC0003DMT400066797	Potato	cytosol	62.68	54.58
Os08t0155100-01	Rice	plasma membrane	61.72	54.43
Zm00001d024588_P001	Maize	cytosol, extracellular, mitochondrion	62.68	54.36
KXG24454	Sorghum	cytosol	62.2	53.94
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	61.72	53.75
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	58.85	51.46
GSMUA_Achr5P20880_001	Banana	cytosol	57.42	50.21
Bra000978.1-P	Field mustard	cytosol	56.46	50.0
CDX91914	Canola	cytosol	56.46	50.0
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	56.94	49.79
CDX74330	Canola	cytosol	55.5	49.15
GSMUA_Achr1P20280_001	Banana	cytosol	48.33	47.2
GSMUA_Achr8P11120_001	Banana	cytosol	57.89	43.21
GSMUA_Achr11P...	Banana	cytosol	40.67	42.5
Solyc08g007390.2.1	Tomato	unclear	36.36	37.81
GSMUA_Achr3P08840_001	Banana	cytosol	40.19	35.0
GSMUA_Achr11P...	Banana	cytosol	38.28	34.78
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	38.28	34.33
GSMUA_Achr8P21990_001	Banana	cytosol	45.93	31.89
GSMUA_Achr10P...	Banana	cytosol	44.02	30.67

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	EnsemblPlantsGene:GSMUA_Achr6G36770_001	EnsemblPlants:GSMUA_Achr6P36770_001	EnsemblPlants:GSMUA_Achr6T36770_001
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0TDB7	InterPro:MSP_dom	PFAM:PF00635
PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF43	InterPro:PapD-like_sf	SUPFAM:SSF49354
UniParc:UPI000296A4F7	InterPro:VAP	SEG:seg	:	:	:

Description

MSP domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G36770_001]

Coordinates

chr6:-:34711701..34713368

Molecular Weight (calculated)

23269.9 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.308

Length

209 amino acids

Sequence
(BLAST)

001: MSDGGFLEIQ PTELKFPFEL KKQSSCSMQL INKTDHFVAF KVKTTNPKKY CVRPNTGMVL PRSTCDVTVT MQAQKEAPPD MQCKDKFLLQ SVIAEHGATT
101: KDITSEMFNK EPGKVVDEFK LRVVYVPAGP PSPVHEESEE GSSPRSSTFE NGTQSLQTLD SVSRSNEPSK EKSPEVPSST FLSIIGLEIL EIFLSFCSLF
201: YMLLAFEVP

Best Arabidopsis Sequence Match ( AT3G60600.2 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEVFFTILP
201: SLSPSKPCDI IFCFCSV

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.