Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G296900.1 | Wheat | cytosol, golgi, plasma membrane | 98.32 | 98.32 |
| TraesCS7A01G301500.1 | Wheat | cytosol, golgi, plasma membrane | 98.32 | 98.32 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 94.96 | 94.96 |
| Os08t0155100-01 | Rice | plasma membrane | 78.99 | 79.32 |
| Zm00001d024588_P001 | Maize | cytosol, extracellular, mitochondrion | 78.99 | 78.01 |
| KXG24454 | Sorghum | cytosol | 78.99 | 78.01 |
| GSMUA_Achr1P20230_001 | Banana | cytosol | 68.07 | 68.35 |
| GSMUA_Achr6P36770_001 | Banana | cytosol | 56.3 | 64.11 |
| VIT_15s0048g00600.t01 | Wine grape | cytosol, nucleus, plasma membrane | 62.18 | 61.92 |
| GSMUA_Achr7P06650_001 | Banana | cytosol | 54.62 | 60.19 |
| PGSC0003DMT400066797 | Potato | cytosol | 60.5 | 60.0 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 60.08 | 59.58 |
| GSMUA_Achr1P05960_001 | Banana | cytosol, golgi, plasma membrane | 58.82 | 58.33 |
| Bra000978.1-P | Field mustard | cytosol | 56.3 | 56.78 |
| CDX91914 | Canola | cytosol | 56.3 | 56.78 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 56.3 | 56.07 |
| CDX74330 | Canola | cytosol | 55.46 | 55.93 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 50.42 | 52.63 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 52.94 | 50.6 |
| Solyc08g007390.2.1 | Tomato | unclear | 39.08 | 46.27 |
| TraesCS6B01G277000.1 | Wheat | cytosol | 42.44 | 43.16 |
| TraesCS1B01G204400.1 | Wheat | cytosol | 48.74 | 42.34 |
| TraesCS2B01G430600.1 | Wheat | cytosol, plastid | 42.86 | 42.15 |
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 35.71 | 36.64 |
| TraesCS2B01G036500.1 | Wheat | cytosol | 21.01 | 33.56 |
| TraesCS3B01G511900.2 | Wheat | cytosol | 45.8 | 30.03 |
| TraesCS6B01G008300.1 | Wheat | cytosol | 22.27 | 20.31 |
| TraesCS2B01G214400.1 | Wheat | mitochondrion | 21.01 | 18.66 |
| TraesCS7B01G459800.1 | Wheat | cytosol | 23.11 | 10.7 |
| TraesCS7B01G460100.2 | Wheat | cytosol | 21.43 | 10.45 |
| TraesCS3B01G103500.2 | Wheat | cytosol | 22.69 | 9.71 |
| TraesCS6B01G001300.1 | Wheat | cytosol, nucleus, plasma membrane | 18.91 | 9.59 |
| TraesCS7B01G002600.1 | Wheat | cytosol | 17.23 | 9.19 |
| TraesCS4B01G372400.1 | Wheat | cytosol | 20.17 | 9.01 |
| TraesCS2B01G100300.1 | Wheat | cytosol | 16.81 | 8.55 |
| TraesCS7B01G462400.1 | Wheat | cytosol | 21.01 | 8.17 |
| TraesCS7B01G460400.1 | Wheat | cytosol | 26.89 | 8.01 |
| TraesCS7B01G461000.2 | Wheat | cytosol | 27.73 | 7.76 |
| TraesCS3B01G611100.1 | Wheat | cytosol | 23.95 | 7.39 |
| TraesCS7B01G463000.1 | Wheat | mitochondrion | 30.25 | 7.09 |
| TraesCS7B01G459900.1 | Wheat | cytosol | 25.63 | 7.07 |
| TraesCS7B01G462600.1 | Wheat | cytosol | 25.21 | 6.95 |
| TraesCS2B01G025500.1 | Wheat | cytosol | 20.17 | 4.93 |
| TraesCS3B01G593500.1 | Wheat | cytosol | 26.89 | 4.49 |
| TraesCS4B01G343200.1 | Wheat | cytosol | 26.47 | 4.47 |
| TraesCS7B01G460600.1 | Wheat | cytosol | 12.61 | 4.37 |
| TraesCS6B01G008400.1 | Wheat | cytosol | 24.79 | 3.86 |
| TraesCS7B01G353800.1 | Wheat | cytosol | 23.53 | 3.26 |
| TraesCS4B01G004000.1 | Wheat | cytosol, peroxisome, plasma membrane | 27.31 | 2.75 |
| TraesCS3B01G574400.1 | Wheat | cytosol | 0.84 | 0.75 |
| TraesCS6B01G013900.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 |
| PANTHER:PTHR10809:SF43 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS7B01G201800 | EnsemblPlants:TraesCS7B01G201800.1 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:369106117..369110011
Molecular Weight (calculated)
25746.7 Da
IEP (calculated)
7.824
GRAVY (calculated)
-0.258
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAGSASFLE IQPSELAFPF ELMKQSSCSM QLANKTDHYV AFKVKTTNPK QYCVRPNIGV VLPGSTCDVT VTMQAQREAP PDLQCKDKFL VQSVAAENGA
101: ATQDISAAMF NKEPGKVVDE CKLRVIYVPT SSPSLFSEDS EQGSSARSLE NGTPNSTLPQ SVFRSSGEAS KEKSSEATSM ISKLTEEKMS AVQQNQKLRQ
201: ELDVLRKESS KSNGGFSITF LIVVGILGII AGFILKKT
101: ATQDISAAMF NKEPGKVVDE CKLRVIYVPT SSPSLFSEDS EQGSSARSLE NGTPNSTLPQ SVFRSSGEAS KEKSSEATSM ISKLTEEKMS AVQQNQKLRQ
201: ELDVLRKESS KSNGGFSITF LIVVGILGII AGFILKKT
001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI
Arabidopsis Description
PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
SUBAcon: [peroxisome,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.