Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G247700.1 | Wheat | cytosol | 98.72 | 98.72 |
| TraesCS6D01G229800.1 | Wheat | cytosol | 98.29 | 98.29 |
| HORVU6Hr1G063580.1 | Barley | cytosol | 95.3 | 95.3 |
| Os02t0661900-02 | Rice | cytosol | 34.62 | 76.42 |
| EES07504 | Sorghum | plastid | 64.96 | 57.14 |
| Zm00001d051383_P001 | Maize | cytosol, plastid | 63.25 | 56.27 |
| TraesCS2B01G430600.1 | Wheat | cytosol, plastid | 54.27 | 52.48 |
| GSMUA_Achr1P04220_001 | Banana | cytosol, nucleus, plasma membrane | 51.71 | 50.84 |
| GSMUA_Achr7P07100_001 | Banana | cytosol | 50.0 | 49.16 |
| Bra000978.1-P | Field mustard | cytosol | 48.29 | 47.88 |
| CDX91914 | Canola | cytosol | 48.29 | 47.88 |
| VIT_15s0048g00600.t01 | Wine grape | cytosol, nucleus, plasma membrane | 48.72 | 47.7 |
| CDX74330 | Canola | cytosol | 47.44 | 47.03 |
| PGSC0003DMT400066797 | Potato | cytosol | 47.86 | 46.67 |
| Solyc01g090990.2.1 | Tomato | nucleus, plastid, unclear | 47.44 | 46.25 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 47.01 | 46.03 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 41.45 | 42.54 |
| TraesCS7B01G201800.1 | Wheat | cytosol, golgi, plasma membrane | 43.16 | 42.44 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 42.73 | 40.16 |
| Solyc08g007390.2.1 | Tomato | unclear | 29.91 | 34.83 |
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 34.19 | 34.48 |
| TraesCS1B01G204400.1 | Wheat | cytosol | 38.46 | 32.85 |
| TraesCS2B01G036500.1 | Wheat | cytosol | 17.52 | 27.52 |
| TraesCS3B01G511900.2 | Wheat | cytosol | 32.91 | 21.21 |
| TraesCS2B01G214400.1 | Wheat | mitochondrion | 23.5 | 20.52 |
| TraesCS6B01G008300.1 | Wheat | cytosol | 19.23 | 17.24 |
| TraesCS7B01G002600.1 | Wheat | cytosol | 18.38 | 9.64 |
| TraesCS6B01G001300.1 | Wheat | cytosol, nucleus, plasma membrane | 18.8 | 9.38 |
| TraesCS3B01G103500.2 | Wheat | cytosol | 20.51 | 8.63 |
| TraesCS2B01G100300.1 | Wheat | cytosol | 17.09 | 8.55 |
| TraesCS7B01G460100.2 | Wheat | cytosol | 17.52 | 8.4 |
| TraesCS7B01G459800.1 | Wheat | cytosol | 17.95 | 8.17 |
| TraesCS4B01G372400.1 | Wheat | cytosol | 18.38 | 8.07 |
| TraesCS3B01G611100.1 | Wheat | cytosol | 23.08 | 7.0 |
| TraesCS7B01G461000.2 | Wheat | cytosol | 23.08 | 6.35 |
| TraesCS7B01G462400.1 | Wheat | cytosol | 16.24 | 6.21 |
| TraesCS7B01G460400.1 | Wheat | cytosol | 20.94 | 6.13 |
| TraesCS7B01G462600.1 | Wheat | cytosol | 21.79 | 5.91 |
| TraesCS7B01G459900.1 | Wheat | cytosol | 21.37 | 5.79 |
| TraesCS7B01G463000.1 | Wheat | mitochondrion | 24.79 | 5.71 |
| TraesCS2B01G025500.1 | Wheat | cytosol | 16.67 | 4.01 |
| TraesCS3B01G593500.1 | Wheat | cytosol | 23.08 | 3.79 |
| TraesCS4B01G343200.1 | Wheat | cytosol | 22.65 | 3.76 |
| TraesCS6B01G008400.1 | Wheat | cytosol | 21.79 | 3.33 |
| TraesCS7B01G460600.1 | Wheat | cytosol | 9.4 | 3.2 |
| TraesCS7B01G353800.1 | Wheat | cytosol | 18.8 | 2.56 |
| TraesCS4B01G004000.1 | Wheat | cytosol, peroxisome, plasma membrane | 23.93 | 2.37 |
| TraesCS3B01G574400.1 | Wheat | cytosol | 0.85 | 0.75 |
| TraesCS6B01G013900.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 |
| PANTHER:PTHR10809:SF51 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6B01G277000 | EnsemblPlants:TraesCS6B01G277000.1 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:501107001..501109181
Molecular Weight (calculated)
26282.6 Da
IEP (calculated)
8.043
GRAVY (calculated)
-0.380
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNTLLRIYP SELKMPFELR KSNSGCIELV NKTDQRVAFK VKTTNPKKYA VRPTSGIVPP GGSCGITITM QAPKEIPQDY QCKDKFLIQS VVVQEGITHK
101: DIVPEMFGRA PGRVVEEFKL RVIYIPANPP SPVPEGDEEE IADTEVDHEV FRQSMIDAAS RQEYASGPQA SHDKDASTVK SEVVKYVAEN KKLQQELEQL
201: SERRQSLGGF SRTFVLFVFL LSVLVGYWMT GRKV
101: DIVPEMFGRA PGRVVEEFKL RVIYIPANPP SPVPEGDEEE IADTEVDHEV FRQSMIDAAS RQEYASGPQA SHDKDASTVK SEVVKYVAEN KKLQQELEQL
201: SERRQSLGGF SRTFVLFVFL LSVLVGYWMT GRKV
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.