Factsheet for Os02t0661900-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G063580.1	Barley	cytosol	77.36	35.04
TraesCS6B01G277000.1	Wheat	cytosol	76.42	34.62
TraesCS6A01G247700.1	Wheat	cytosol	75.47	34.19
TraesCS6D01G229800.1	Wheat	cytosol	74.53	33.76
EES07504	Sorghum	plastid	73.58	29.32
GSMUA_Achr7P07100_001	Banana	cytosol	63.21	28.15
Zm00001d051383_P001	Maize	cytosol, plastid	68.87	27.76
GSMUA_Achr1P04220_001	Banana	cytosol, nucleus, plasma membrane	62.26	27.73
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	61.32	27.2
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	61.32	27.2
Bra000978.1-P	Field mustard	cytosol	60.38	27.12
CDX91914	Canola	cytosol	60.38	27.12
Os04t0554200-02	Rice	cytosol, nucleus, plastid	62.26	27.05
CDX74330	Canola	cytosol	59.43	26.69
Os08t0155100-01	Rice	plasma membrane	55.66	24.89
Os04t0369000-01	Rice	cytosol, plasma membrane	32.08	24.82
PGSC0003DMT400066797	Potato	cytosol	54.72	24.17
Solyc01g090990.2.1	Tomato	nucleus, plastid, unclear	54.72	24.17
Os08t0156700-01	Rice	plasma membrane	54.72	23.87
Os10t0507600-01	Rice	cytosol, plasma membrane	51.89	22.92
Os04t0534400-01	Rice	cytosol	53.77	22.8
Os02t0643000-01	Rice	plasma membrane	55.66	22.78
Os10t0549100-01	Rice	plasma membrane	49.06	22.32
Os02t0652550-00	Rice	cytosol	51.89	20.6
Solyc08g007390.2.1	Tomato	unclear	26.42	13.93
Os01t0936800-01	Rice	cytosol, plasma membrane	46.23	12.89
Os05t0373000-01	Rice	cytosol	43.4	9.64

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	UniProt:A0A0P0VMK0	ProteinID:BAS80147.1	ProteinID:BAS80148.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	EnsemblPlantsGene:Os02g0661900
EnsemblPlants:Os02t0661900-02	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF51	InterPro:PapD-like_sf
SUPFAM:SSF49354	UniParc:UPI000393AB20	InterPro:VAP	:	:	:

Description

Similar to OSIGBa0143N19.13 protein. (Os02t0661900-01);Similar to Vesicle-associated membrane protein-associated protein B/C (VAMP- associated protein B/C) (VAMP-B/VAMP-C) (VAP-B/VAP-C). Splice isoform 2. (Os02t0661900-02)

Coordinates

chr2:+:26799907..26802318

Molecular Weight (calculated)

12002.6 Da

IEP (calculated)

9.574

GRAVY (calculated)

-0.497

Length

106 amino acids

Sequence
(BLAST)

001: MSNTLLRIYP SELKIPFELK RQNSGILELT NKTDHHVAFK VKTTNPRKYS VRPTTGIVLP RGSCGITISM QPPKEIPTDY NCKDKFLIQS VVVEDGTTQK
101: DIHSDM

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [cytosol,golgi,peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.