Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
- plastid 1
- plasma membrane 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 85.41 | 85.78 |
| TraesCS6D01G224100.1 | Wheat | cytosol, golgi, plasma membrane | 85.41 | 85.78 |
| TraesCS6A01G242200.1 | Wheat | cytosol, golgi, plasma membrane | 84.98 | 85.34 |
| Os02t0652550-00 | Rice | cytosol | 90.56 | 79.03 |
| HORVU6Hr1G062050.9 | Barley | mitochondrion | 85.41 | 68.38 |
| GSMUA_Achr11P... | Banana | cytosol | 67.38 | 68.26 |
| GSMUA_Achr5P18320_001 | Banana | cytosol, nucleus, plasma membrane | 67.81 | 67.81 |
| Zm00001d051329_P002 | Maize | mitochondrion, plasma membrane, plastid | 86.27 | 66.56 |
| Zm00001d017448_P001 | Maize | endoplasmic reticulum, golgi, plastid | 86.27 | 64.84 |
| EES05798 | Sorghum | plastid | 87.98 | 63.27 |
| KRH28185 | Soybean | cytosol, golgi, nucleus | 53.22 | 56.62 |
| AT5G47180.1 | Thale cress | cytosol | 51.93 | 55.0 |
| KRH04206 | Soybean | cytosol | 51.93 | 54.5 |
| CDY40565 | Canola | cytosol | 50.64 | 54.13 |
| CDY28969 | Canola | cytosol | 50.64 | 54.13 |
| Bra022110.1-P | Field mustard | cytosol | 50.64 | 54.13 |
| KRH57501 | Soybean | plasma membrane | 48.93 | 54.03 |
| CDY33519 | Canola | cytosol | 50.21 | 53.67 |
| PGSC0003DMT400067515 | Potato | nucleus | 50.64 | 53.64 |
| CDX77746 | Canola | cytosol | 49.79 | 53.21 |
| Bra022111.1-P | Field mustard | cytosol | 50.21 | 53.18 |
| Solyc08g078000.2.1 | Tomato | nucleus | 50.21 | 53.18 |
| Bra024958.1-P | Field mustard | cytosol | 49.36 | 52.75 |
| CDY43438 | Canola | cytosol | 49.79 | 52.73 |
| Bra017499.1-P | Field mustard | cytosol | 49.36 | 52.27 |
| CDY25982 | Canola | cytosol | 49.36 | 52.27 |
| PGSC0003DMT400052797 | Potato | cytosol | 47.64 | 51.63 |
| Solyc08g007200.2.1 | Tomato | unclear | 47.64 | 51.63 |
| Os02t0661900-02 | Rice | cytosol | 22.32 | 49.06 |
| KRH77304 | Soybean | plasma membrane, vacuole | 51.5 | 48.19 |
| Os08t0155100-01 | Rice | plasma membrane | 35.62 | 35.02 |
| Os04t0534400-01 | Rice | cytosol | 36.91 | 34.4 |
| Os02t0643000-01 | Rice | plasma membrane | 37.77 | 33.98 |
| Os08t0156700-01 | Rice | plasma membrane | 34.76 | 33.33 |
| Os10t0507600-01 | Rice | cytosol, plasma membrane | 32.19 | 31.25 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 31.76 | 30.33 |
| Os04t0369000-01 | Rice | cytosol, plasma membrane | 17.17 | 29.2 |
| VIT_00s0287g00080.t01 | Wine grape | extracellular | 33.48 | 22.41 |
| Os01t0936800-01 | Rice | cytosol, plasma membrane | 36.48 | 22.37 |
| Os05t0373000-01 | Rice | cytosol | 36.48 | 17.82 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | EntrezGene:4349306 | ProteinID:AAK43500.1 | ProteinID:AAP54911.1 | EMBL:AK100377 |
| ProteinID:BAF27146.1 | ProteinID:BAT11938.1 | ncoils:Coil | ProteinID:EAZ16893.1 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom | EnsemblPlantsGene:Os10g0549100 | EnsemblPlants:Os10t0549100-01 |
| PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF42 | InterPro:PapD-like_sf |
| UniProt:Q94LV0 | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI00000A38AC | InterPro:VAP | RefSeq:XP_015613956.1 |
Description
PapD-like domain containing protein. (Os10t0549100-01)
Coordinates
chr10:-:21486842..21489738
Molecular Weight (calculated)
26189.6 Da
IEP (calculated)
8.888
GRAVY (calculated)
-0.307
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MGASGRLISI YPEDLTFLFE LDKPCYCNLK VVNNSEHHVA FKVKTTSPRK YFVRPNASII QPWDSCTITI TLQAQKEYPP DMQCKDKFLI QSTKVAASTD
101: MDEIPPNTFN KEVDKVIEEM KLKVVYTVPS GSSDDSGITS LGSRSFKLGS DDLTMLKNAS IEKIQTIQRL KDERDTTLQQ NQQMQRELDV IRRRRSRKSD
201: AGFSLTFAAF AGLIGVLIGL LMSLIFPRPQ AAA
101: MDEIPPNTFN KEVDKVIEEM KLKVVYTVPS GSSDDSGITS LGSRSFKLGS DDLTMLKNAS IEKIQTIQRL KDERDTTLQQ NQQMQRELDV IRRRRSRKSD
201: AGFSLTFAAF AGLIGVLIGL LMSLIFPRPQ AAA
001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
Arabidopsis Description
PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.