Factsheet for Bra022111.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017499.1-P	Field mustard	cytosol	97.73	97.73
Bra022110.1-P	Field mustard	cytosol	91.36	92.2
Bra024958.1-P	Field mustard	cytosol	90.91	91.74
AT5G47180.1	Thale cress	cytosol	90.45	90.45
KRH28185	Soybean	cytosol, golgi, nucleus	62.73	63.01
Solyc08g007200.2.1	Tomato	unclear	60.91	62.33
PGSC0003DMT400052797	Potato	cytosol	60.45	61.86
Solyc08g078000.2.1	Tomato	nucleus	61.36	61.36
PGSC0003DMT400067515	Potato	nucleus	61.36	61.36
KRH04206	Soybean	cytosol	60.91	60.36
KRH57501	Soybean	plasma membrane	57.73	60.19
KRH77304	Soybean	plasma membrane, vacuole	61.36	54.22
GSMUA_Achr11P...	Banana	cytosol	56.36	53.91
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	55.0	51.93
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	53.64	50.86
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	53.64	50.86
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	53.64	50.86
Os10t0549100-01	Rice	plasma membrane	53.18	50.21
Os02t0652550-00	Rice	cytosol	54.09	44.57
Bra003313.1-P	Field mustard	cytosol	42.73	42.15
Bra000978.1-P	Field mustard	cytosol	45.0	41.95
HORVU6Hr1G062050.9	Barley	mitochondrion	54.55	41.24
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	43.64	40.17
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	54.09	39.4
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	42.27	38.91
Bra007547.1-P	Field mustard	cytosol	41.82	38.66
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	54.09	38.39
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	41.82	38.33
Zm00001d014260_P001	Maize	plastid	30.91	38.2
EES05798	Sorghum	plastid	54.55	37.04
Bra035442.1-P	Field mustard	cytosol	15.91	32.41
VIT_00s0287g00080.t01	Wine grape	extracellular	42.27	26.72
TraesCS2B01G214400.1	Wheat	mitochondrion	31.36	25.75
Bra031641.1-P	Field mustard	cytosol	35.45	22.74
Bra018597.1-P	Field mustard	cytosol	35.91	21.29
Bra030744.1-P	Field mustard	cytosol	35.91	20.1

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra022111	EnsemblPlants:Bra022111.1	EnsemblPlants:Bra022111.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4E014
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF42
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0002546130	InterPro:VAP	SEG:seg

Description

AT5G47180 (E=6e-100) | vesicle-associated membrane family protein / VAMP family protein

Coordinates

chrA02:-:19456486..19458082

Molecular Weight (calculated)

24380.2 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.368

Length

220 amino acids

Sequence
(BLAST)

001: MSGVGENQLI SIVPDELKFL FELEKQSYCD LKVANKTEDY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTTVPPH
101: TDVDELPQDT FTKDSSKTLT ECKLKVSYIA TSTTQRSSES GATSGDGNGS ESISVTAIQR LKEERDAAVK QTQQLQHDLE MLKKRRSNSA NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.