Factsheet for Bra022110.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40565	Canola	cytosol	99.54	99.54
CDY28969	Canola	cytosol	99.54	99.54
Bra024958.1-P	Field mustard	cytosol	94.95	94.95
AT5G47180.1	Thale cress	cytosol	93.58	92.73
Bra022111.1-P	Field mustard	cytosol	92.2	91.36
Bra017499.1-P	Field mustard	cytosol	89.91	89.09
KRH28185	Soybean	cytosol, golgi, nucleus	64.68	64.38
PGSC0003DMT400067515	Potato	nucleus	63.76	63.18
KRH04206	Soybean	cytosol	64.22	63.06
KRH57501	Soybean	plasma membrane	61.01	63.03
Solyc08g078000.2.1	Tomato	nucleus	63.3	62.73
Solyc08g007200.2.1	Tomato	unclear	61.01	61.86
PGSC0003DMT400052797	Potato	cytosol	60.55	61.4
GSMUA_Achr11P...	Banana	cytosol	58.26	55.22
KRH77304	Soybean	plasma membrane, vacuole	62.84	55.02
GSMUA_Achr5P18320_001	Banana	cytosol, nucleus, plasma membrane	56.42	52.79
TraesCS6A01G242200.1	Wheat	cytosol, golgi, plasma membrane	54.13	50.86
TraesCS6B01G282300.1	Wheat	cytosol, golgi, plasma membrane	54.13	50.86
TraesCS6D01G224100.1	Wheat	cytosol, golgi, plasma membrane	54.13	50.86
Os10t0549100-01	Rice	plasma membrane	54.13	50.64
Os02t0652550-00	Rice	cytosol	55.05	44.94
Bra000978.1-P	Field mustard	cytosol	47.71	44.07
Bra003313.1-P	Field mustard	cytosol	44.04	43.05
HORVU6Hr1G062050.9	Barley	mitochondrion	55.05	41.24
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	44.95	41.0
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	43.58	39.75
Bra007547.1-P	Field mustard	cytosol	43.12	39.5
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	43.12	39.17
Zm00001d051329_P002	Maize	mitochondrion, plasma membrane, plastid	54.13	39.07
Zm00001d017448_P001	Maize	endoplasmic reticulum, golgi, plastid	54.13	38.06
Zm00001d014260_P001	Maize	plastid	30.73	37.64
EES05798	Sorghum	plastid	54.59	36.73
Bra035442.1-P	Field mustard	cytosol	16.51	33.33
VIT_00s0287g00080.t01	Wine grape	extracellular	44.04	27.59
TraesCS2B01G214400.1	Wheat	mitochondrion	31.65	25.75
Bra031641.1-P	Field mustard	cytosol	37.61	23.91
Bra018597.1-P	Field mustard	cytosol	38.07	22.37
Bra030744.1-P	Field mustard	cytosol	38.07	21.12

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	ProteinID:AAO32056	ProteinID:AAO32056.1	EMBL:AY185354	EnsemblPlantsGene:Bra022110
EnsemblPlants:Bra022110.1	EnsemblPlants:Bra022110.1-P	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	UniProt:M4E013	InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202
PANTHER:PTHR10809	PANTHER:PTHR10809:SF42	InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI000254612F
InterPro:VAP	SEG:seg	:	:	:	:

Description

AT5G47180 (E=6e-101) | vesicle-associated membrane family protein / VAMP family protein

Coordinates

chrA02:-:19454199..19455709

Molecular Weight (calculated)

24294.2 Da

IEP (calculated)

8.304

GRAVY (calculated)

-0.422

Length

218 amino acids

Sequence
(BLAST)

001: MSGVGENQLI SIVPDELKFL FELEKQSYCD LKVANKTEDY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDDLPQDT FTKDSGKTLT ECKLKVSYIS PSTTQRSSES GATNGDGNGS ETISTIQRLK EERDAAVKQP QQLQHELEMV KRRRNQSNSG LSLKLAALVG
201: LIGLIIGFIL KLTLASPT

Best Arabidopsis Sequence Match ( AT5G47180.2 )
(BLAST)

001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT

Arabidopsis Description

PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.