Factsheet for Bra003423.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001840.1-P
Bra002268.1-P
Bra002403.1-P
Bra003423.1-P
Bra003737.1-P
Bra004430.1-P
Bra005215.1-P
Bra005216.1-P
Bra005930.1-P
Bra006523.1-P
Bra006619.1-P
Bra007547.1-P
Bra008874.1-P
Bra009279.1-P
Bra009280.1-P
Bra009746.1-P
Bra010670.1-P
Bra011585.1-P
Bra012289.1-P
Bra013226.1-P
Bra014118.1-P
Bra014481.1-P
Bra014848.1-P
Bra015613.1-P
Bra015804.1-P
Bra016411.1-P
Bra016620.1-P
Bra016774.1-P
Bra017697.1-P
Bra017936.1-P
Bra018237.1-P
Bra019762.1-P
Bra020182.1-P
Bra021442.1-P
Bra021906.1-P
Bra022748.1-P
Bra022985.1-P
Bra023102.1-P
Bra023103.1-P
Bra023866.1-P
Bra023867.1-P
Bra024856.1-P
Bra026434.1-P
Bra026634.1-P
Bra026690.1-P
Bra026997.1-P
Bra027009.1-P
Bra027622.1-P
Bra030565.1-P
Bra030605.1-P
Bra031296.1-P
Bra031297.1-P
Bra033558.1-P
Bra033633.1-P
Bra034675.1-P
Bra034700.1-P
Bra039259.1-P
Bra039375.1-P
Bra040984.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60600.1	Bra030565.1-P	AT1G04340.1	21798944
AT3G60600.1	Bra016774.1-P	AT1G12390.1	21798944
AT3G60600.1	Bra019762.1-P	AT1G12390.1	21798944
AT3G60600.1	Bra016620.1-P	AT1G17080.1	21798944
AT3G60600.1	Bra026690.1-P	AT1G17080.1	21798944
AT3G60600.1	Bra040984.1-P	AT1G17080.1	21798944
AT3G60600.1	Bra015613.1-P	AT1G47530.1	21798944
AT3G60600.1	Bra014118.1-P	AT1G48240.1	21798944
AT3G60600.1	Bra027009.1-P	AT1G62880.1	21798944
AT3G60600.1	Bra039259.1-P	AT1G62880.1	21798944
AT3G60600.1	Bra026997.1-P	AT1G63120.1	21798944
AT3G60600.1	Bra027622.1-P	AT1G63120.1	21798944
AT3G60600.1	Bra003737.1-P	AT1G75880.1	21798944
AT3G60600.1	Bra015804.1-P	AT1G75880.1	21798944
AT3G60600.1	Bra012289.1-P	AT1G77350.1	21798944
AT3G60600.1	Bra016411.1-P	AT1G77350.1	21798944
AT3G60600.1	Bra017936.1-P	AT1G77350.1	21798944
AT3G60600.1	Bra024856.1-P	AT2G01770.1	21798944
AT3G60600.1	Bra026634.1-P	AT2G01770.1	21798944
AT3G60600.1	Bra018237.1-P	AT2G31490.1	21798944
AT3G60600.1	Bra030605.1-P	AT2G32380.1	21798944
AT3G60600.1	Bra021906.1-P	AT2G34380.1	21798944
AT3G60600.1	Bra022985.1-P	AT2G34690.1	18845362
AT3G60600.1	Bra005215.1-P	AT2G37180.1	21798944
AT3G60600.1	Bra005216.1-P	AT2G37180.1	21798944
AT3G60600.1	Bra023102.1-P	AT2G37180.1	21798944
AT3G60600.1	Bra023103.1-P	AT2G37180.1	21798944
AT3G60600.1	Bra004430.1-P	AT2G47770.1	21798944
AT3G60600.1	Bra021442.1-P	AT2G47770.1	21798944
AT3G60600.1	Bra034700.1-P	AT3G13175.1	21798944
AT3G60600.1	Bra039375.1-P	AT3G13175.1	21798944
AT3G60600.1	Bra001840.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra023866.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra023867.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra031296.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra031297.1-P	AT3G21690.1	21798944
AT3G60600.1	Bra013226.1-P	AT3G25190.1	21798944
AT3G60600.1	Bra014848.1-P	AT3G54020.1	21798944
AT3G60600.1	Bra003423.1-P	AT3G60600.1	21798944
AT3G60600.1	Bra007547.1-P	AT3G60600.1	21798944
AT3G60600.1	Bra014481.1-P	AT3G60600.1	21798944
AT3G60600.1	Bra026434.1-P	AT4G26455.1	21798944
AT3G60600.1	Bra011585.1-P	AT4G35100.1	21798944
AT3G60600.1	Bra017697.1-P	AT4G35100.1	21798944
AT3G60600.1	Bra034675.1-P	AT4G35100.1	21798944
AT3G60600.1	Bra033558.1-P	AT4G38250.1	21798944
AT3G60600.1	Bra010670.1-P	AT4G39670.1	18845362
AT3G60600.1	Bra033633.1-P	AT4G39670.1	18845362
AT3G60600.1	Bra005930.1-P	AT5G07250.1	21798944
AT3G60600.1	Bra009279.1-P	AT5G07250.1	21798944
AT3G60600.1	Bra009280.1-P	AT5G07250.1	21798944
AT3G60600.1	Bra008874.1-P	AT5G12880.1	21798944
AT3G60600.1	Bra002268.1-P	AT5G19875.1	21798944
AT3G60600.1	Bra006523.1-P	AT5G19875.1	21798944
AT3G60600.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G60600.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G60600.1	Bra020182.1-P	AT5G22290.1	21798944
AT3G60600.1	Bra009746.1-P	AT5G24290.1	21798944
AT3G60600.1	Bra022748.1-P	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67837	Canola	cytosol, golgi, plasma membrane	100.0	100.0
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	93.33	93.72
Bra007547.1-P	Field mustard	cytosol	92.08	92.86
AT3G60600.1	Thale cress	cytosol	90.42	84.77
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	80.42	80.75
Bra003313.1-P	Field mustard	cytosol	75.0	80.72
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	72.08	72.38
Solyc01g090910.2.1	Tomato	nucleus	68.33	70.39
KRH76164	Soybean	endoplasmic reticulum	68.33	68.05
KRH65384	Soybean	cytosol	68.33	68.05
Solyc10g018350.1.1	Tomato	cytosol	63.75	64.29
Zm00001d049553_P001	Maize	plasma membrane	61.25	60.25
Os08t0156700-01	Rice	plasma membrane	60.83	60.08
EES14570	Sorghum	cytosol, nucleus, plasma membrane	60.83	59.84
TraesCS7A01G300700.1	Wheat	cytosol	60.42	59.67
TraesCS7D01G296400.1	Wheat	cytosol	60.42	59.67
GSMUA_Achr5P20880_001	Banana	cytosol	59.17	59.41
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	58.75	59.0
Bra035442.1-P	Field mustard	cytosol	26.25	58.33
PGSC0003DMT400066920	Potato	cytosol	63.75	57.3
Bra000978.1-P	Field mustard	cytosol	56.25	57.2
GSMUA_Achr1P20280_001	Banana	cytosol	50.42	56.54
Zm00001d017390_P001	Maize	cytosol	52.5	56.0
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	52.92	55.95
Zm00001d051288_P001	Maize	cytosol	52.08	55.56
HORVU2Hr1G091830.4	Barley	cytosol	57.5	55.42
TraesCS2A01G368500.1	Wheat	cytosol	57.5	55.42
EES12559	Sorghum	cytosol	57.5	55.42
Os04t0534400-01	Rice	cytosol	57.5	55.2
Solyc06g034220.2.1	Tomato	nucleus	52.08	55.07
TraesCS2B01G385700.2	Wheat	cytosol	57.08	55.02
KXG31128	Sorghum	cytosol	51.25	54.67
TraesCS2D01G365300.2	Wheat	cytosol	56.67	54.62
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	50.42	53.07
TraesCS6D01G220300.1	Wheat	cytosol	50.42	53.07
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	50.0	52.63
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	50.0	52.63
GSMUA_Achr8P11120_001	Banana	cytosol	60.0	51.43
GSMUA_Achr11P...	Banana	cytosol	41.67	50.0
HORVU7Hr1G071270.2	Barley	mitochondrion	59.58	48.47
Os02t0643000-01	Rice	plasma membrane	51.25	47.49
PGSC0003DMT400076826	Potato	cytosol	11.67	46.67
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	56.25	45.3
Bra022110.1-P	Field mustard	cytosol	39.17	43.12
Bra017499.1-P	Field mustard	cytosol	38.75	42.27
Bra022111.1-P	Field mustard	cytosol	38.33	41.82
Bra024958.1-P	Field mustard	cytosol	37.5	41.28
Zm00001d036342_P001	Maize	cytosol	39.58	38.0
Bra031641.1-P	Field mustard	cytosol	41.67	29.15
Bra018597.1-P	Field mustard	cytosol	41.25	26.68
Bra030744.1-P	Field mustard	cytosol	40.42	24.68

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EnsemblPlantsGene:Bra003423	EnsemblPlants:Bra003423.1	EnsemblPlants:Bra003423.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4CGU0
InterPro:MSP_dom	PFAM:PF00635	PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94
InterPro:PapD-like_sf	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI00025417F2	InterPro:VAP	SEG:seg

Description

AT3G60600 (E=2e-108) VAP27-1, VAP, (AT)VAP, VAP27 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding

Coordinates

chrA07:+:13138698..13140564

Molecular Weight (calculated)

26577.0 Da

IEP (calculated)

7.957

GRAVY (calculated)

-0.411

Length

240 amino acids

Sequence
(BLAST)

001: MSNSELLNVE PLDLQFPFEL RKQISCSLYL TNKTDNHVAF KVKTTNPKKY CVRPNTGVVL PRSTCEVLVT MQAQKEAPSD MQCKDKFLLQ GVIASPGVTA
101: KEVTPEMFSK EAGHLVEETK LRVTYVAPPQ PPSPVHEGSE EGSSPRASVS DNGGHASEFS SQRFIAADKV EPQENTSEVR ALITKLTEEK QSAIQLNNKL
201: QRELDQLRRD SKRGQSGMPL MYVLLVGLIG LILGYIMKST

Best Arabidopsis Sequence Match ( AT3G60600.1 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.