Factsheet for Bra009746.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88089	Canola	cytosol, nucleus, plasma membrane	99.61	96.28
AT5G24290.1	Thale cress	cytosol	44.12	41.64
Bra019020.1-P	Field mustard	plasma membrane, plastid	18.88	35.77
VIT_00s0245g00030.t01	Wine grape	plasma membrane	12.52	32.66
GSMUA_Achr6P36880_001	Banana	cytosol, nucleus, plasma membrane	16.57	30.82
TraesCS6B01G375800.1	Wheat	extracellular	6.55	30.09
TraesCS7B01G200500.1	Wheat	extracellular	6.17	28.07
PGSC0003DMT400001535	Potato	cytosol, peroxisome, plasma membrane	17.73	27.63
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	15.41	26.06
VIT_00s0245g00010.t01	Wine grape	cytosol	17.15	24.38
GSMUA_Achr1P20170_001	Banana	nucleus	20.42	23.61
VIT_00s0267g00030.t01	Wine grape	cytosol	17.92	23.25
Solyc09g059460.2.1	Tomato	cytosol	21.58	22.27
KRH66122	Soybean	cytosol	18.69	21.46
TraesCS4A01G141900.1	Wheat	extracellular	4.82	21.01
Bra019021.1-P	Field mustard	cytosol, nucleus, plasma membrane	24.66	20.09
PGSC0003DMT400071835	Potato	cytosol, nucleus, plasma membrane	21.39	19.11
Bra026303.1-P	Field mustard	cytosol, nucleus, plasma membrane	21.19	18.52
Bra026302.1-P	Field mustard	nucleus	27.17	17.89
KRH72565	Soybean	cytosol, nucleus	18.3	17.12
Os06t0103800-01	Rice	plasma membrane	24.66	17.02
TraesCS4A01G457600.2	Wheat	nucleus	25.24	16.77
OQU75676	Sorghum	plasma membrane	23.89	16.71
Bra026304.1-P	Field mustard	cytosol, nucleus, plasma membrane	19.27	16.69
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	19.85	15.63
KRH16940	Soybean	cytosol, nucleus, plasma membrane	24.47	15.47
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	18.69	15.06
Zm00001d035875_P002	Maize	nucleus	23.89	14.85
TraesCS4A01G457700.2	Wheat	nucleus	24.47	14.84
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	18.3	14.68
Bra010393.1-P	Field mustard	nucleus	19.46	14.31
TraesCS7D01G027900.2	Wheat	nucleus	23.7	14.12
TraesCS7D01G028000.1	Wheat	nucleus	23.7	14.09
HORVU7Hr1G003870.3	Barley	nucleus	23.7	13.88
TraesCS7A01G031400.2	Wheat	nucleus	23.51	13.88
HORVU7Hr1G003880.2	Barley	nucleus	8.86	10.98
Solyc03g096800.2.1	Tomato	nucleus	24.47	10.93

Protein Annotations

MapMan:24.2.12.2	EnsemblPlantsGene:Bra009746	EnsemblPlants:Bra009746.1	EnsemblPlants:Bra009746.1-P	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005381	GO:GO:0005384	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0008150	GO:GO:0010168	GO:GO:0016020	GO:GO:0016021	GO:GO:0034755
GO:GO:0071421	UniProt:M4CZU9	PANTHER:PTHR31851	PANTHER:PTHR31851:SF16	TMHMM:TMhelix	UniParc:UPI000253F174
SEG:seg	:	:	:	:	:

Description

AT5G24290 (E=1e-064) | integral membrane family protein

Coordinates

chrA06:-:16991725..16993950

Molecular Weight (calculated)

58071.1 Da

IEP (calculated)

4.464

GRAVY (calculated)

-0.433

Length

519 amino acids

Sequence
(BLAST)

001: MDRPADGSKF GERGEIVDAD FLVGLLETFR FGKYNLPAIK NVLNAPAKVT SATEQQQDKT IENQDEEGSQ GLVGNTSVHE SIGSVSSSSD PIILDTMSET
101: GSHNEPVSNE ESGSNNEPVL NEESGYNWLE SNPTNLPNVE NERHHNAEEG EIVVEEEIYK EDEEDKEDEE EEEDENKNSE RTSSESEEKS NLETLLAIQE
201: KYELYCPSCS SCITRKVILR KKEHVKLVDL YADLKPYEST DIEEIEPPVK LHVPETLIEN GDQEDKKEGY IFTCLACLKY YIRKVEVHLE PRKSSNTTET
301: PPQNKLDRER FTVELLKSTV YGGLTETITS LVVVSSASAS GSSTENILAL AVANLAGGLI VLAQNLRDLR NNSDQENDRY NELLGRRDNI RLHVLVAVLS
401: YIFFGLIAPL VYAFSFYQTG IKNYKLVSVF SVSLVCAIML GMIKVYVRKP VNVRESPKPY LKSAAYYTSI VVVSSGVSHI VGEIVGEYIR KLGLFSLYQT
501: GLTSTFDGIK PEKYRFTSF

Best Arabidopsis Sequence Match ( AT5G24290.1 )
(BLAST)

001: MEKSNQPVHV TLSELKDGDK EIVDAEFLVD LLESYRFGKD NVPAREFRSK AAATAPAPVN TTEIELEEDN DGSQAQGNNS VSESTSSLFS DSDPIVLEST
101: VSETGSNEES ETGSNEENGN NWLESSSTNL PNVENKRQRN GEDCEIEEEE ENNERSLSDS EEKSNLEKLL GTQENYELGN EDEEKNERSS SDSEEKSNLE
201: NLLATQENYE LYCPSCSTCI TRNVVLKKRK RGKHVNSSLD LKPDIPVVEP DEPSDIEEME SPVKVYVPET RIEDDQEDKE GTIFTCLVCD LKYFIRLGTK
301: FLQLDYIRGK PVEKSVEEYI DVRKSINTTQ SPPQIQPDGE RFAIELLKST VYGGLTETIT SLGVVSSASA SGSSTMNILA LAVANLAGGL IVLAQNFQDL
401: RNSSDQEKDR YEELLGRRTK SRIHILVAVM SYIFFGLIPP LVYAFSFYET GIKNYKLISV FLGSLVCVIL LGSIKVYVRK PTNSCGSTKA YLKSAAYYTS
501: IVVASCGISY VVGDIMGEYI EKLSLVGLDQ ISITSPCYGI KPEECRFTSF

Arabidopsis Description

MEB2Membrane protein of ER body 2 [Source:UniProtKB/Swiss-Prot;Acc:F4KFS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.