Factsheet for PGSC0003DMT400001535

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G375800.1	Wheat	extracellular	14.41	42.48
TraesCS7B01G200500.1	Wheat	extracellular	14.41	42.11
GSMUA_Achr6P36880_001	Banana	cytosol, nucleus, plasma membrane	32.13	38.35
Bra019020.1-P	Field mustard	plasma membrane, plastid	28.83	35.04
CDX92847	Canola	plastid	28.53	34.93
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	32.13	34.85
TraesCS4A01G141900.1	Wheat	extracellular	11.71	32.77
CDY31395	Canola	plasma membrane	19.22	32.65
GSMUA_Achr1P20170_001	Banana	nucleus	34.83	25.84
PGSC0003DMT400071835	Potato	cytosol, nucleus, plasma membrane	36.04	20.65
KRH72565	Soybean	cytosol, nucleus	31.53	18.92
Solyc03g096800.2.1	Tomato	nucleus	63.66	18.24
CDX80427	Canola	cytosol, nucleus, plasma membrane	26.13	17.9
Bra009746.1-P	Field mustard	cytosol, nucleus, plasma membrane	27.63	17.73
CDX97398	Canola	mitochondrion, plasma membrane, plastid	24.92	17.7
CDX88089	Canola	cytosol, nucleus, plasma membrane	28.23	17.5
CDY29865	Canola	cytosol, nucleus, plasma membrane	31.83	16.99
CDX92846	Canola	cytosol, nucleus, plasma membrane	30.63	16.61
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	32.73	16.54
Bra019021.1-P	Field mustard	cytosol, nucleus, plasma membrane	31.53	16.48
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	31.23	16.15
CDX89223	Canola	cytosol, nucleus, plasma membrane	28.83	16.08
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	31.23	16.07
CDY67233	Canola	cytosol, nucleus, plasma membrane	28.53	16.02
CDY31394	Canola	cytosol, nucleus, plasma membrane	28.53	16.02
CDY19020	Canola	cytosol, nucleus, plasma membrane	28.53	16.02
Bra026303.1-P	Field mustard	cytosol, nucleus, plasma membrane	28.23	15.82
Bra026304.1-P	Field mustard	cytosol, nucleus, plasma membrane	27.03	15.03
AT4G27860.3	Thale cress	nucleus	27.93	14.98
OQU75676	Sorghum	plasma membrane	33.03	14.82
AT5G24290.1	Thale cress	cytosol	24.32	14.73
TraesCS4A01G457600.2	Wheat	nucleus	34.23	14.6
CDY19019	Canola	nucleus	33.63	14.23
Os06t0103800-01	Rice	plasma membrane	32.13	14.23
AT4G27870.2	Thale cress	nucleus	33.03	14.08
CDX89224	Canola	cytosol, nucleus, plasma membrane	25.53	14.07
CDY14269	Canola	cytosol	24.02	13.86
Bra026302.1-P	Field mustard	nucleus	32.13	13.58
CDX89222	Canola	nucleus	32.13	13.54
Zm00001d035875_P002	Maize	nucleus	33.03	13.17
TraesCS7D01G028000.1	Wheat	nucleus	33.63	12.83
TraesCS4A01G457700.2	Wheat	nucleus	32.43	12.62
KRH16940	Soybean	cytosol, nucleus, plasma membrane	30.63	12.42
HORVU7Hr1G003870.3	Barley	nucleus	32.43	12.19
TraesCS7A01G031400.2	Wheat	nucleus	31.83	12.06
TraesCS7D01G027900.2	Wheat	nucleus	30.93	11.83
Bra010393.1-P	Field mustard	nucleus	24.92	11.76
CDY19021	Canola	cytosol, nucleus, plasma membrane	13.21	9.19
HORVU7Hr1G003880.2	Barley	nucleus	3.9	3.1

Protein Annotations

EnsemblPlants:PGSC0003DMT400001535	EnsemblPlantsGene:PGSC0003DMG400000570	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR31851
PANTHER:PTHR31851:SF16	PGSC:PGSC0003DMG400000570	TMHMM:TMhelix	UniParc:UPI000296618D	UniProt:M0ZIN2	MapMan:24.2.12.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000570]

Coordinates

chr3:-:47067165..47072675

Molecular Weight (calculated)

36510.6 Da

IEP (calculated)

5.180

GRAVY (calculated)

0.065

Length

333 amino acids

Sequence
(BLAST)

001: MFSSESLVAN NDNKFQLSSE DGAHHYEVSQ HTITKTNIEI HSKQPLNVDE HDLISSVKDA LSIQDKLDNI PNITVEAAAN NIAGNDTIIT VEAGHETRET
101: ASANLDTQIQ SVEGQATDGA DGYKIEIIKS IIFGGLAESI TSLSVVASAT GGDTTTLNIL VLAMANLIGG LFIIFHNLWE LKRDRFEQAS NQIMEKHVDR
201: YREQLGRREN FTLHAVLVIL SYIIFGLLPP VTYGFSFRKS DDKDLKIVAV AAASLVCILM LATGKAYVQR APKPYFKTIS TYIILGFTVS GVSYAAGILF
301: NRLLEKFGFF QPSSTLNLFL PEMPETGAAW ASF

Best Arabidopsis Sequence Match ( AT4G27870.1 )
(BLAST)

001: MGSAAELTEP TTGTEKLHQP IEVEEDDEQI VDLERKTFRH GKGHDTSVDS STITNTSSSS SSSFSGDGGT EETPDFHSNG DGEHTDLVNL EVPELETEIV
101: FHQEHDDGKN CIVFFDGEQG SESAGAIPDA HEESQTADLN GEQTQLEPEN GSTSEDNERS REIEEVLDGD VSKDLDAVDP LAGEVIEEEV DFEDVEYHDV
201: ENMMDKQETH DLYCPNCDSC ITKKVILKRR KRKIRRHELG DSKRPHLTEP LFHSEDNLPS LDGGENSANE SFVFKCLSCF TIFIPKGVSS KPIPPRQGVE
301: GLKIQPNPQV EATGDSNWFS SIFGLNKKES AIQQGGASSS VLEANPPPRE SIVPVVNPSR GNLSPMRKDT TGSAVVQPDA ATSIQVAKSN DTSEIVNNGA
401: IVGDGQKFLA PMVEEQTQQK IDNDDSSTAD GNHTSDKGRL SPIQPSHGMS ILNTVTNGPD GLKVETTIHE EGAPLLFEGK DTPDTSTADF GLTKVTGVMD
501: TGDRGVITGP ANPEIDISAG NLLEEGSLRE PLMRRVVVQG RKLEILKSIV YGGLLEAITS LGVISSAAGS GASMLNILVL GLANLLGGLI LIIHNLQELR
601: EEEPIRTTTE DNQTNGREEE EGRYKRLLGR RENFTLHATV AILSFIITGI LPPVVYYFSF SEKHNKDYKV ASVFGASLFC IVLLAIAKAH VRYPRGSYLK
701: SILYYGSIAV SVSGISYVVG NFLEQLLEKH GWSDGSETPV GQMMLSSLMG RKAGFGYSSS Y

Arabidopsis Description

Vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27870]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.