Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019020.1-P | Field mustard | plasma membrane, plastid | 21.89 | 62.41 |
| CDX92847 | Canola | plastid | 21.25 | 61.03 |
| CDY19019 | Canola | nucleus | 46.61 | 46.25 |
| CDX89222 | Canola | nucleus | 46.22 | 45.7 |
| Bra026302.1-P | Field mustard | nucleus | 45.33 | 44.92 |
| CDX92846 | Canola | cytosol, nucleus, plasma membrane | 34.06 | 43.32 |
| CDY29865 | Canola | cytosol, nucleus, plasma membrane | 33.29 | 41.67 |
| Bra019021.1-P | Field mustard | cytosol, nucleus, plasma membrane | 33.67 | 41.29 |
| TraesCS7B01G200500.1 | Wheat | extracellular | 5.76 | 39.47 |
| VIT_00s0245g00030.t01 | Wine grape | plasma membrane | 9.6 | 37.69 |
| GSMUA_Achr6P36880_001 | Banana | cytosol, nucleus, plasma membrane | 12.93 | 36.2 |
| TraesCS7A01G031500.1 | Wheat | cytosol, peroxisome, plasma membrane | 13.32 | 33.88 |
| GSMUA_Achr1P20170_001 | Banana | nucleus | 19.33 | 33.63 |
| TraesCS6B01G375800.1 | Wheat | extracellular | 4.87 | 33.63 |
| PGSC0003DMT400001535 | Potato | cytosol, peroxisome, plasma membrane | 14.08 | 33.03 |
| VIT_00s0245g00010.t01 | Wine grape | cytosol | 14.21 | 30.41 |
| TraesCS4A01G141900.1 | Wheat | extracellular | 4.61 | 30.25 |
| VIT_00s0267g00030.t01 | Wine grape | cytosol | 15.11 | 29.5 |
| Solyc09g059460.2.1 | Tomato | cytosol | 17.29 | 26.84 |
| KRH66122 | Soybean | cytosol | 14.72 | 25.44 |
| AT5G24290.1 | Thale cress | cytosol | 17.03 | 24.18 |
| PGSC0003DMT400071835 | Potato | cytosol, nucleus, plasma membrane | 17.93 | 24.1 |
| Os06t0103800-01 | Rice | plasma membrane | 23.18 | 24.07 |
| TraesCS4A01G457600.2 | Wheat | nucleus | 23.05 | 23.05 |
| Zm00001d035875_P002 | Maize | nucleus | 24.58 | 22.99 |
| OQU75676 | Sorghum | plasma membrane | 21.64 | 22.78 |
| AT4G27860.3 | Thale cress | nucleus | 18.05 | 22.71 |
| TraesCS7A01G031200.1 | Wheat | cytosol, nucleus, plasma membrane | 18.18 | 21.95 |
| KRH16940 | Soybean | cytosol, nucleus, plasma membrane | 23.05 | 21.92 |
| TraesCS7D01G027600.1 | Wheat | cytosol, nucleus, plasma membrane | 17.67 | 21.43 |
| TraesCS4A01G458000.1 | Wheat | cytosol, nucleus, plasma membrane | 17.8 | 21.09 |
| TraesCS7D01G028000.1 | Wheat | nucleus | 23.56 | 21.08 |
| KRH72565 | Soybean | cytosol, nucleus | 14.6 | 20.54 |
| HORVU7Hr1G003870.3 | Barley | nucleus | 22.92 | 20.2 |
| TraesCS4A01G457700.2 | Wheat | nucleus | 22.02 | 20.09 |
| TraesCS7A01G031400.2 | Wheat | nucleus | 22.54 | 20.02 |
| TraesCS7D01G027900.2 | Wheat | nucleus | 22.28 | 19.98 |
| HORVU7Hr1G003880.2 | Barley | nucleus | 9.73 | 18.14 |
| Solyc03g096800.2.1 | Tomato | nucleus | 21.89 | 14.72 |
Protein Annotations
| ArrayExpress:AT4G27870 | EnsemblPlants:AT4G27870.2 | EnsemblPlantsGene:AT4G27870 | EntrezGene:828900 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF16 | ProteinID:ANM66361.1 | RefSeq:AT4G27870 | RefSeq:AT4G27870-TAIR-G |
| RefSeq:NP_001328259.1 | SEG:seg | TAIR:AT4G27870 | TMHMM:TMhelix | UniParc:UPI000848F351 | UniProt:A0A1P8B475 |
| MapMan:24.2.12.2 | : | : | : | : | : |
Description
Vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27870]
Coordinates
chr4:+:13878755..13882882
Molecular Weight (calculated)
84964.2 Da
IEP (calculated)
4.482
GRAVY (calculated)
-0.445
Length
781 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSAAELTEP TTGTEKLHQP IEVEEDDEQI VDLERKTFRH GKGHDTSVDS STITNTSSSS SSSFSGDGGT EETPDFHSNG DGEHTDLVNL EVPELETEIV
101: FHQEHDDGKN CIVFFDGEQG IWKCRHCDWT YKEGSLLCKG SESAGAIPDA HEESQTADLN GEQTQLEPEN GSTSEDNERS REIEEVLDGD VSKDLDAVDP
201: LAGEVIEEEV DFEDVEYHDV ENMMDKQETH DLYCPNCDSC ITKKVILKRR KRKIRRHELG DSKRPHLTEP LFHSEDNLPS LDGGENSANE SFVFKCLSCF
301: TIFIPKGVSS KPIPPRQGVE GLKIQPNPQV EATGDSNWFS SIFGLNKKES AIQQGGASSS VLEANPPPRE SIVPVVNPSR GNLSPMRKDT TGSAVVQPDA
401: ATSIQVAKSN DTSEIVNNGA IVGDGQKFLA PMVEEQTQQK IDNDDSSTAD GNHTSDKGRL SPIQPSHGMS ILNTVTNGPD GLKVETTIHE EGAPLLFEGK
501: DTPDTSTADF GLTKVTGVMD TGDRGVITGP ANPEIDISAG NLLEEGSLRE PLMRRVVVQG RKLEILKSIV YGGLLEAITS LGVISSAAGS GASMLNILVL
601: GLANLLGGLI LIIHNLQELR EEEPIRTTTE DNQTNGREEE EGRYKRLLGR RENFTLHATV AILSFIITGI LPPVVYYFSF SEKHNKDYKV ASVFGASLFC
701: IVLLAIAKAH VRYPRGSYLK SILYYGSIAV SVSGISYVVG NFLEQLLEKH GWSDGSETPV GQMMLSSLMG RKAGFGYSSS Y
101: FHQEHDDGKN CIVFFDGEQG IWKCRHCDWT YKEGSLLCKG SESAGAIPDA HEESQTADLN GEQTQLEPEN GSTSEDNERS REIEEVLDGD VSKDLDAVDP
201: LAGEVIEEEV DFEDVEYHDV ENMMDKQETH DLYCPNCDSC ITKKVILKRR KRKIRRHELG DSKRPHLTEP LFHSEDNLPS LDGGENSANE SFVFKCLSCF
301: TIFIPKGVSS KPIPPRQGVE GLKIQPNPQV EATGDSNWFS SIFGLNKKES AIQQGGASSS VLEANPPPRE SIVPVVNPSR GNLSPMRKDT TGSAVVQPDA
401: ATSIQVAKSN DTSEIVNNGA IVGDGQKFLA PMVEEQTQQK IDNDDSSTAD GNHTSDKGRL SPIQPSHGMS ILNTVTNGPD GLKVETTIHE EGAPLLFEGK
501: DTPDTSTADF GLTKVTGVMD TGDRGVITGP ANPEIDISAG NLLEEGSLRE PLMRRVVVQG RKLEILKSIV YGGLLEAITS LGVISSAAGS GASMLNILVL
601: GLANLLGGLI LIIHNLQELR EEEPIRTTTE DNQTNGREEE EGRYKRLLGR RENFTLHATV AILSFIITGI LPPVVYYFSF SEKHNKDYKV ASVFGASLFC
701: IVLLAIAKAH VRYPRGSYLK SILYYGSIAV SVSGISYVVG NFLEQLLEKH GWSDGSETPV GQMMLSSLMG RKAGFGYSSS Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.