Factsheet for GSMUA_Achr6P36880_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0245g00030.t01	Wine grape	plasma membrane	27.96	39.2
TraesCS7B01G200500.1	Wheat	extracellular	15.41	37.72
TraesCS6B01G375800.1	Wheat	extracellular	14.7	36.28
Bra019020.1-P	Field mustard	plasma membrane, plastid	35.13	35.77
CDX92847	Canola	plastid	34.41	35.29
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	36.2	32.9
TraesCS4A01G141900.1	Wheat	extracellular	13.98	32.77
GSMUA_Achr1P20170_001	Banana	nucleus	52.33	32.52
PGSC0003DMT400001535	Potato	cytosol, peroxisome, plasma membrane	38.35	32.13
CDY31395	Canola	plasma membrane	21.86	31.12
VIT_00s0267g00030.t01	Wine grape	cytosol	42.29	29.5
VIT_00s0245g00010.t01	Wine grape	cytosol	38.35	29.32
KRH66122	Soybean	cytosol	34.77	21.46
Solyc09g059460.2.1	Tomato	cytosol	33.33	18.49
CDX80427	Canola	cytosol, nucleus, plasma membrane	30.47	17.49
Bra009746.1-P	Field mustard	cytosol, nucleus, plasma membrane	30.82	16.57
AT5G24290.1	Thale cress	cytosol	32.62	16.55
CDX92846	Canola	cytosol, nucleus, plasma membrane	35.84	16.29
KRH72565	Soybean	cytosol, nucleus	32.26	16.22
CDX97398	Canola	mitochondrion, plasma membrane, plastid	27.24	16.2
CDX88089	Canola	cytosol, nucleus, plasma membrane	30.82	16.01
CDY31394	Canola	cytosol, nucleus, plasma membrane	33.69	15.85
CDY67233	Canola	cytosol, nucleus, plasma membrane	33.69	15.85
PGSC0003DMT400071835	Potato	cytosol, nucleus, plasma membrane	32.97	15.83
Bra026303.1-P	Field mustard	cytosol, nucleus, plasma membrane	33.69	15.82
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	36.56	15.77
CDX89223	Canola	cytosol, nucleus, plasma membrane	33.69	15.75
CDY19020	Canola	cytosol, nucleus, plasma membrane	33.33	15.68
CDY29865	Canola	cytosol, nucleus, plasma membrane	34.77	15.54
Bra019021.1-P	Field mustard	cytosol, nucleus, plasma membrane	35.48	15.54
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	35.48	15.37
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	35.84	15.17
OQU75676	Sorghum	plasma membrane	40.14	15.09
Os06t0103800-01	Rice	plasma membrane	40.14	14.89
AT4G27860.3	Thale cress	nucleus	32.62	14.65
TraesCS4A01G457600.2	Wheat	nucleus	37.99	13.57
CDX89222	Canola	nucleus	37.28	13.16
Bra026302.1-P	Field mustard	nucleus	36.92	13.07
AT4G27870.2	Thale cress	nucleus	36.2	12.93
TraesCS4A01G457700.2	Wheat	nucleus	39.43	12.85
CDY19019	Canola	nucleus	36.2	12.83
CDY14269	Canola	cytosol	26.16	12.65
TraesCS7D01G027900.2	Wheat	nucleus	39.07	12.51
Zm00001d035875_P002	Maize	nucleus	37.28	12.46
CDX89224	Canola	cytosol, nucleus, plasma membrane	26.88	12.42
TraesCS7A01G031400.2	Wheat	nucleus	38.71	12.29
TraesCS7D01G028000.1	Wheat	nucleus	37.63	12.03
Bra026304.1-P	Field mustard	cytosol, nucleus, plasma membrane	25.81	12.02
HORVU7Hr1G003870.3	Barley	nucleus	36.92	11.63
KRH16940	Soybean	cytosol, nucleus, plasma membrane	33.33	11.33
Bra010393.1-P	Field mustard	nucleus	26.16	10.34
Solyc03g096800.2.1	Tomato	nucleus	39.07	9.38
CDY19021	Canola	cytosol, nucleus, plasma membrane	15.77	9.19
GSMUA_Achr6P36870_001	Banana	nucleus	5.38	8.72
HORVU7Hr1G003880.2	Barley	nucleus	2.51	1.67

Protein Annotations

EnsemblPlants:GSMUA_Achr6P36880_001	EnsemblPlants:GSMUA_Achr6T36880_001	EnsemblPlantsGene:GSMUA_Achr6G36880_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31851	PANTHER:PTHR31851:SF16	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002955EB8	UniProt:M0TDC8
MapMan:24.2.12.2	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G36880_001]

Coordinates

chr6:-:34780022..34783102

Molecular Weight (calculated)

30734.9 Da

IEP (calculated)

5.010

GRAVY (calculated)

-0.024

Length

279 amino acids

Sequence
(BLAST)

001: MKQIKELIDD GVNDNDVRMK DDSGVDANKI TSQSDQIIQG SETSTTEVLA HSDVRINVAE QTARDTEISN DWDILKSIVY GGLNESITSL AVVSSAAGAD
101: VSTLKIVALG LAKLIGGFLL ITHELFELRT AQDEATEQKD EQGGRYWELL GWRANFRRHF PVATISYILF GLVPPVVYGF SFRRSDEKEF KLMAVAASSL
201: LCTALLALCK AHVKPQKGYV KTMVYYLVLG VSACGPSYLA GMMIDKLLEK LGLFDHGTTL QSPPTLMCQD LREPSWTSY

Best Arabidopsis Sequence Match ( AT4G27860.1 )
(BLAST)

001: MDPTMNPTPT PSSAGNSVCT DELTNLPPED SPLDSEKDDS VDFSQEQGSE SNEAIDTENG SRSVDKNQYS ETEVVVRAKD LQTEPDSLDD DVEIVIKNQH
101: KYYIYCPCCG EDITKTVKLV KISDPKHTKD HDKAVDSDTE NGSKSKDKNT KVPSWFSDFI QPLFSSEDRG KKGVVDSELL GTYEDLGIIG EEPSIDVSNE
201: KDRPSFPKWY LDVFAWLFLC IIIALSVLST SPPPFIQPHL QLPSMPTLRM PSASVLLLLP TSAVLLLFII SMRSRFTPRY HKEKGEVVPK STDSKSHDDQ
301: AANTDQDFDK KTDNKRNRLT PIYPSSLEKP SKQTVNKETQ NHDKEAADPD QDVDKETENQ KSHLTPIYPS PLEQPSKQII NKETQTEPML PPNAQSEIPN
401: SVEPRKGGNK VEILKSIVYG GLTESITSLC TVTSAAASGA STLNVLALGV ANLSSGLLLT VHSLQELINE KPRKQTNTDD SPEEGEGEED RYEEVLGRRE
501: YSRIHRVIAI SSFVIFGLIP PLVYGFSFRK KMEKRQEYKV LAVYAVSLLC IVLLSIAKAY VSKKRDYVKT LFRYTTTATT ASGFSQFVGY LVSQWLEKSG
601: FYDDSPETQR V

Arabidopsis Description

vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27860]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.