Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31394 | Canola | cytosol, nucleus, plasma membrane | 50.89 | 53.29 |
| CDY67233 | Canola | cytosol, nucleus, plasma membrane | 50.89 | 53.29 |
| CDX89223 | Canola | cytosol, nucleus, plasma membrane | 50.08 | 52.09 |
| CDY19020 | Canola | cytosol, nucleus, plasma membrane | 49.6 | 51.94 |
| Bra026303.1-P | Field mustard | cytosol, nucleus, plasma membrane | 49.28 | 51.52 |
| GSMUA_Achr6P36880_001 | Banana | cytosol, nucleus, plasma membrane | 14.65 | 32.62 |
| VIT_00s0245g00030.t01 | Wine grape | plasma membrane | 10.31 | 32.16 |
| TraesCS7B01G200500.1 | Wheat | extracellular | 5.8 | 31.58 |
| TraesCS6B01G375800.1 | Wheat | extracellular | 5.64 | 30.97 |
| VIT_00s0245g00010.t01 | Wine grape | cytosol | 16.43 | 27.95 |
| PGSC0003DMT400001535 | Potato | cytosol, peroxisome, plasma membrane | 14.98 | 27.93 |
| GSMUA_Achr1P20170_001 | Banana | nucleus | 20.13 | 27.84 |
| VIT_00s0267g00030.t01 | Wine grape | cytosol | 17.55 | 27.25 |
| TraesCS7A01G031500.1 | Wheat | cytosol, peroxisome, plasma membrane | 13.2 | 26.71 |
| TraesCS4A01G141900.1 | Wheat | extracellular | 4.83 | 25.21 |
| Solyc09g059460.2.1 | Tomato | cytosol | 17.39 | 21.47 |
| KRH66122 | Soybean | cytosol | 15.62 | 21.46 |
| AT5G24290.1 | Thale cress | cytosol | 18.2 | 20.55 |
| PGSC0003DMT400071835 | Potato | cytosol, nucleus, plasma membrane | 19.0 | 20.31 |
| KRH72565 | Soybean | cytosol, nucleus | 16.26 | 18.2 |
| AT4G27870.2 | Thale cress | nucleus | 22.71 | 18.05 |
| OQU75676 | Sorghum | plasma membrane | 20.13 | 16.85 |
| TraesCS4A01G457600.2 | Wheat | nucleus | 20.61 | 16.39 |
| Os06t0103800-01 | Rice | plasma membrane | 19.81 | 16.36 |
| TraesCS7D01G027600.1 | Wheat | cytosol, nucleus, plasma membrane | 15.94 | 15.37 |
| TraesCS4A01G458000.1 | Wheat | cytosol, nucleus, plasma membrane | 16.26 | 15.33 |
| TraesCS4A01G457700.2 | Wheat | nucleus | 21.09 | 15.3 |
| TraesCS7A01G031400.2 | Wheat | nucleus | 21.42 | 15.13 |
| TraesCS7A01G031200.1 | Wheat | cytosol, nucleus, plasma membrane | 15.62 | 14.99 |
| KRH16940 | Soybean | cytosol, nucleus, plasma membrane | 19.81 | 14.98 |
| Zm00001d035875_P002 | Maize | nucleus | 20.13 | 14.97 |
| TraesCS7D01G028000.1 | Wheat | nucleus | 20.77 | 14.78 |
| TraesCS7D01G027900.2 | Wheat | nucleus | 20.45 | 14.58 |
| HORVU7Hr1G003870.3 | Barley | nucleus | 20.13 | 14.11 |
| Solyc03g096800.2.1 | Tomato | nucleus | 23.03 | 12.31 |
| HORVU7Hr1G003880.2 | Barley | nucleus | 6.28 | 9.31 |
Protein Annotations
| ArrayExpress:AT4G27860 | EnsemblPlants:AT4G27860.3 | EnsemblPlantsGene:AT4G27860 | EntrezGene:828899 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IL1/FGF | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF16 | ProteinID:ANM67490.1 | RefSeq:AT4G27860 |
| RefSeq:AT4G27860-TAIR-G | RefSeq:NP_001329317.1 | SEG:seg | SUPFAM:SSF50353 | TAIR:AT4G27860 | TMHMM:TMhelix |
| UniParc:UPI0008491FFC | UniProt:A0A1P8B7E1 | MapMan:24.2.12.2 | : | : | : |
Description
vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27860]
Coordinates
chr4:+:13873808..13876528
Molecular Weight (calculated)
69165.2 Da
IEP (calculated)
4.668
GRAVY (calculated)
-0.494
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPTMNPTPT PSSAGNSVCT DELTNLPPED SPLDSEKDDS VDFSQEQGSE SNEAIDTENG SRSVDKNQYS ETEVVVRAKD LQTEPDSLDD DVEIVIKNQH
101: KYYIYCPCCG EDITKTVKLV KISDPKHTKD HDKAVDSDTE NGSKSKDKNT KVPSWFSDFI QPLFSSEDRG TLSSSSFDIV RWTVVIELDF LAIPGKKGVV
201: DSELLGTYED LGIIGEEPSI DVSNEKDRPS FPKWYLDVFA WLFLCIIIAL SVLSTSPPPF IQPHLQLPSM PTLRMPSASV LLLLPTSAVL LLFIISMRSR
301: FTPRYHKEKG EVVPKSTDSK SHDDQAANTD QDFDKKTEKP SKQTVNKETQ NHDKEAADPD QDVDKETENQ KSHLTPIYPS PLEQPSKQII NKETQTEPML
401: PPNAQSEIPN SVEPRKGGNK VEILKSIVYG GLTESITSLC TVTSAAASGA STLNVLALGV ANLSSGLLLT VHSLQELINE KPRKQTNTDD SPEEGEGEED
501: RYEEVLGRRE YSRIHRVIAI SSFVIFGLIP PLVYGFSFRK KMEKRQEYKV LAVYAVSLLC IVLLSIAKAY VSKKRDYVKT LFRYTTTATT ASGFSQFVGY
601: LVSQWLEKSG FYDDSPETQR V
101: KYYIYCPCCG EDITKTVKLV KISDPKHTKD HDKAVDSDTE NGSKSKDKNT KVPSWFSDFI QPLFSSEDRG TLSSSSFDIV RWTVVIELDF LAIPGKKGVV
201: DSELLGTYED LGIIGEEPSI DVSNEKDRPS FPKWYLDVFA WLFLCIIIAL SVLSTSPPPF IQPHLQLPSM PTLRMPSASV LLLLPTSAVL LLFIISMRSR
301: FTPRYHKEKG EVVPKSTDSK SHDDQAANTD QDFDKKTEKP SKQTVNKETQ NHDKEAADPD QDVDKETENQ KSHLTPIYPS PLEQPSKQII NKETQTEPML
401: PPNAQSEIPN SVEPRKGGNK VEILKSIVYG GLTESITSLC TVTSAAASGA STLNVLALGV ANLSSGLLLT VHSLQELINE KPRKQTNTDD SPEEGEGEED
501: RYEEVLGRRE YSRIHRVIAI SSFVIFGLIP PLVYGFSFRK KMEKRQEYKV LAVYAVSLLC IVLLSIAKAY VSKKRDYVKT LFRYTTTATT ASGFSQFVGY
601: LVSQWLEKSG FYDDSPETQR V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.