Factsheet for PGSC0003DMT400071835

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g059460.2.1	Tomato	cytosol	51.81	59.84
VIT_00s0245g00030.t01	Wine grape	plasma membrane	13.94	40.7
PGSC0003DMT400001535	Potato	cytosol, peroxisome, plasma membrane	20.65	36.04
TraesCS6B01G375800.1	Wheat	extracellular	6.88	35.4
TraesCS7B01G200500.1	Wheat	extracellular	6.71	34.21
Bra019020.1-P	Field mustard	plasma membrane, plastid	16.01	33.94
CDX92847	Canola	plastid	15.83	33.82
CDY31395	Canola	plasma membrane	11.36	33.67
GSMUA_Achr6P36880_001	Banana	cytosol, nucleus, plasma membrane	15.83	32.97
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	17.38	32.9
TraesCS4A01G141900.1	Wheat	extracellular	6.2	30.25
VIT_00s0267g00030.t01	Wine grape	cytosol	20.48	29.75
VIT_00s0245g00010.t01	Wine grape	cytosol	18.42	29.32
KRH66122	Soybean	cytosol	22.72	29.2
GSMUA_Achr1P20170_001	Banana	nucleus	21.34	27.62
CDY29865	Canola	cytosol, nucleus, plasma membrane	23.58	21.96
CDX80427	Canola	cytosol, nucleus, plasma membrane	18.07	21.6
Bra009746.1-P	Field mustard	cytosol, nucleus, plasma membrane	19.11	21.39
CDX88089	Canola	cytosol, nucleus, plasma membrane	19.45	21.04
Bra019021.1-P	Field mustard	cytosol, nucleus, plasma membrane	23.06	21.04
CDX92846	Canola	cytosol, nucleus, plasma membrane	22.2	21.01
CDX97398	Canola	mitochondrion, plasma membrane, plastid	16.7	20.68
AT4G27860.3	Thale cress	nucleus	20.31	19.0
CDY31394	Canola	cytosol, nucleus, plasma membrane	19.28	18.89
CDY67233	Canola	cytosol, nucleus, plasma membrane	19.28	18.89
CDX89223	Canola	cytosol, nucleus, plasma membrane	19.11	18.59
OQU75676	Sorghum	plasma membrane	23.58	18.46
AT5G24290.1	Thale cress	cytosol	17.38	18.36
CDY19020	Canola	cytosol, nucleus, plasma membrane	18.59	18.21
Os06t0103800-01	Rice	plasma membrane	23.41	18.09
CDY19019	Canola	nucleus	24.44	18.04
Bra026303.1-P	Field mustard	cytosol, nucleus, plasma membrane	18.42	18.01
CDX89222	Canola	nucleus	24.44	17.97
AT4G27870.2	Thale cress	nucleus	24.1	17.93
TraesCS4A01G457600.2	Wheat	nucleus	23.92	17.8
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	19.45	17.47
Bra026302.1-P	Field mustard	nucleus	23.41	17.26
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	19.11	17.24
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	19.28	17.0
TraesCS4A01G457700.2	Wheat	nucleus	24.44	16.59
CDX89224	Canola	cytosol, nucleus, plasma membrane	17.21	16.56
Zm00001d035875_P002	Maize	nucleus	23.75	16.53
Bra026304.1-P	Field mustard	cytosol, nucleus, plasma membrane	16.87	16.36
HORVU7Hr1G003870.3	Barley	nucleus	24.78	16.25
TraesCS7D01G027900.2	Wheat	nucleus	24.27	16.19
CDY14269	Canola	cytosol	16.01	16.12
TraesCS7D01G028000.1	Wheat	nucleus	24.1	16.04
TraesCS7A01G031400.2	Wheat	nucleus	23.58	15.59
CDY19021	Canola	cytosol, nucleus, plasma membrane	11.02	13.36
Bra010393.1-P	Field mustard	nucleus	16.01	13.17
HORVU7Hr1G003880.2	Barley	nucleus	7.75	10.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400071835	EnsemblPlantsGene:PGSC0003DMG400027948	EntrezGene:102584554	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR38937	PGSC:PGSC0003DMG400027948	RefSeq:XP_006340060.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029521B1
UniProt:M1CPD6	MapMan:24.2.12.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027948]

Coordinates

chr9:-:31110988..31117832

Molecular Weight (calculated)

63379.3 Da

IEP (calculated)

5.118

GRAVY (calculated)

-0.225

Length

581 amino acids

Sequence
(BLAST)

001: MEVAAQHNWM AEETVEDTLI IREARRSANV DRGVVNEDEV SSSSDEEEAS KDKLKNSVYF NEVIDAVDFH VVLNGDHHTG NANGQINETG NPKGEILSTV
101: CVPLLHGQNS PVETGNPKGE IILDVCVPLL HGQNLLDETE NQILSGVCQP LLYGQNLLDE TENPKGVCGQ NSLDETGKYG KGEILPGVWL PPNSQGHDSQ
201: SSSSIRKGSG NETIIEQVEE ETVELEFFDT TAVDKLKHTH NAYCPKCNSR ITKVVLRRVK RERRIIIETD DDRHDQKSEL LGCLSCFSVF VRIGKKLNPF
301: PIFGNGGGTT STEIAGESHL PNTDEGGFIP GIMPPKKSPA EIIESKGDDY RIPILEDPRA SPSTGHSSNP QRPILPVEVK DSRSLEIVKC IVYGGLIEAI
401: TSLGVVSSAA ASDADTMKIV TIGVANLIGG LFVICQNLVD LKYSVGGGSN YQVDRYGELL GQRKNFPLHA TFAMLSYFVF GLIPPVIYGF TFRKSDDRDY
501: KLIAVAAASL LCVIILAAAK AYTQRANKFS KYFKTILSYV IAAGMVSGVG YAAGHLIKRL MDDMGWFDSK PISQNPAWAS Y

Best Arabidopsis Sequence Match ( AT4G27870.1 )
(BLAST)

001: MGSAAELTEP TTGTEKLHQP IEVEEDDEQI VDLERKTFRH GKGHDTSVDS STITNTSSSS SSSFSGDGGT EETPDFHSNG DGEHTDLVNL EVPELETEIV
101: FHQEHDDGKN CIVFFDGEQG SESAGAIPDA HEESQTADLN GEQTQLEPEN GSTSEDNERS REIEEVLDGD VSKDLDAVDP LAGEVIEEEV DFEDVEYHDV
201: ENMMDKQETH DLYCPNCDSC ITKKVILKRR KRKIRRHELG DSKRPHLTEP LFHSEDNLPS LDGGENSANE SFVFKCLSCF TIFIPKGVSS KPIPPRQGVE
301: GLKIQPNPQV EATGDSNWFS SIFGLNKKES AIQQGGASSS VLEANPPPRE SIVPVVNPSR GNLSPMRKDT TGSAVVQPDA ATSIQVAKSN DTSEIVNNGA
401: IVGDGQKFLA PMVEEQTQQK IDNDDSSTAD GNHTSDKGRL SPIQPSHGMS ILNTVTNGPD GLKVETTIHE EGAPLLFEGK DTPDTSTADF GLTKVTGVMD
501: TGDRGVITGP ANPEIDISAG NLLEEGSLRE PLMRRVVVQG RKLEILKSIV YGGLLEAITS LGVISSAAGS GASMLNILVL GLANLLGGLI LIIHNLQELR
601: EEEPIRTTTE DNQTNGREEE EGRYKRLLGR RENFTLHATV AILSFIITGI LPPVVYYFSF SEKHNKDYKV ASVFGASLFC IVLLAIAKAH VRYPRGSYLK
701: SILYYGSIAV SVSGISYVVG NFLEQLLEKH GWSDGSETPV GQMMLSSLMG RKAGFGYSSS Y

Arabidopsis Description

Vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27870]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.