CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88089	Canola	cytosol, nucleus, plasma membrane	69.96	63.31
AT5G24290.1	Thale cress	cytosol	48.15	42.55
CDX92847	Canola	plastid	19.55	34.93
CDY31395	Canola	plasma membrane	13.37	33.16
VIT_00s0245g00030.t01	Wine grape	plasma membrane	13.17	32.16
GSMUA_Achr6P36880_001	Banana	cytosol, nucleus, plasma membrane	17.49	30.47
TraesCS6B01G375800.1	Wheat	extracellular	7.0	30.09
TraesCS7B01G200500.1	Wheat	extracellular	6.38	27.19
PGSC0003DMT400001535	Potato	cytosol, peroxisome, plasma membrane	17.9	26.13
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	15.64	24.76
VIT_00s0267g00030.t01	Wine grape	cytosol	20.16	24.5
VIT_00s0245g00010.t01	Wine grape	cytosol	18.11	24.11
GSMUA_Achr1P20170_001	Banana	nucleus	22.22	24.05
TraesCS4A01G141900.1	Wheat	extracellular	5.35	21.85
CDX92846	Canola	cytosol, nucleus, plasma membrane	26.95	21.34
KRH66122	Soybean	cytosol	19.75	21.24
CDY29865	Canola	cytosol, nucleus, plasma membrane	26.75	20.83
Solyc09g059460.2.1	Tomato	cytosol	21.19	20.48
CDX97398	Canola	mitochondrion, plasma membrane, plastid	17.9	18.55
CDY19020	Canola	cytosol, nucleus, plasma membrane	22.43	18.38
CDY67233	Canola	cytosol, nucleus, plasma membrane	22.22	18.21
CDY31394	Canola	cytosol, nucleus, plasma membrane	22.22	18.21
CDX89223	Canola	cytosol, nucleus, plasma membrane	22.22	18.09
PGSC0003DMT400071835	Potato	cytosol, nucleus, plasma membrane	21.6	18.07
CDY19019	Canola	nucleus	28.4	17.53
CDX89222	Canola	nucleus	27.98	17.22
Os06t0103800-01	Rice	plasma membrane	26.54	17.15
KRH72565	Soybean	cytosol, nucleus	19.34	16.94
CDY14269	Canola	cytosol	19.96	16.81
TraesCS4A01G457600.2	Wheat	nucleus	26.54	16.52
OQU75676	Sorghum	plasma membrane	25.1	16.44
Zm00001d035875_P002	Maize	nucleus	26.75	15.57
CDX89224	Canola	cytosol, nucleus, plasma membrane	18.72	15.07
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	19.96	15.06
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	20.37	15.02
KRH16940	Soybean	cytosol, nucleus, plasma membrane	25.31	14.98
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	19.75	14.84
TraesCS4A01G457700.2	Wheat	nucleus	25.31	14.37
TraesCS7D01G028000.1	Wheat	nucleus	25.72	14.32
TraesCS7D01G027900.2	Wheat	nucleus	25.51	14.24
TraesCS7A01G031400.2	Wheat	nucleus	25.51	14.11
HORVU7Hr1G003870.3	Barley	nucleus	25.51	14.0
CDY19021	Canola	cytosol, nucleus, plasma membrane	11.32	11.48
HORVU7Hr1G003880.2	Barley	nucleus	9.67	11.22
Solyc03g096800.2.1	Tomato	nucleus	25.72	10.76

Protein Annotations

EnsemblPlants:CDX80427	EnsemblPlantsGene:GSBRNA2T00133500001	GO:A0A078CUI0	ncoils:Coil	PANTHER:PTHR31851	PANTHER:PTHR31851:SF16
ProteinID:CDX80427	ProteinID:CDX80427.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE01CA	MapMan:24.2.12.2

Description

BnaC07g30170D

Coordinates

chrLK031821:-:406886..409574

Molecular Weight (calculated)

54264.8 Da

IEP (calculated)

4.510

GRAVY (calculated)

-0.386

Length

486 amino acids

Sequence
(BLAST)

001: MDRPADGSKF GERGEIVDAD FLVGLLDTFR FGKYNLPAIK NVLNAPAKVT SATEQQDKTT EKQDDGSQGL VGDASVRESI GSVSSSSDPV ILDDMSETES
101: GYNWLESNST NLPSVENERH HNEDEEEEEE EEEKDENKNS ERTSSDSEEK SNLETLLAIQ EKYELYCPSC SSCITRKVIL RKKEHGKLVD ESSDIEEIEP
201: HVKVHTPKKL ITENEDQEYK EEGYLFACLA CLKYYIRLGT RFLRRDDEPV EVLLESRESS NTTESESPPQ NKLDRERFLV ELLKSTVYGG LTETITSLVV
301: VSSASASGSS TENILALAVA NLAGGLIVLA QNLQDLRNSS DQEKDRYNEL LGRRDNIRLH VLVAVLSYVF FGLIAPLVYA FSFYQTGIKN YKLVSGFSVS
401: LVCAIMLGMI KVYVRKPINV RPSPKPYLNS AAYYTSIVVV SSGISYIVGE IVGEYIRKLG LFSLYQTGLT STLDGIKPEE YRFTSL

Best Arabidopsis Sequence Match ( AT5G24290.1 )
(BLAST)

001: MEKSNQPVHV TLSELKDGDK EIVDAEFLVD LLESYRFGKD NVPAREFRSK AAATAPAPVN TTEIELEEDN DGSQAQGNNS VSESTSSLFS DSDPIVLEST
101: VSETGSNEES ETGSNEENGN NWLESSSTNL PNVENKRQRN GEDCEIEEEE ENNERSLSDS EEKSNLEKLL GTQENYELGN EDEEKNERSS SDSEEKSNLE
201: NLLATQENYE LYCPSCSTCI TRNVVLKKRK RGKHVNSSLD LKPDIPVVEP DEPSDIEEME SPVKVYVPET RIEDDQEDKE GTIFTCLVCD LKYFIRLGTK
301: FLQLDYIRGK PVEKSVEEYI DVRKSINTTQ SPPQIQPDGE RFAIELLKST VYGGLTETIT SLGVVSSASA SGSSTMNILA LAVANLAGGL IVLAQNFQDL
401: RNSSDQEKDR YEELLGRRTK SRIHILVAVM SYIFFGLIPP LVYAFSFYET GIKNYKLISV FLGSLVCVIL LGSIKVYVRK PTNSCGSTKA YLKSAAYYTS
501: IVVASCGISY VVGDIMGEYI EKLSLVGLDQ ISITSPCYGI KPEECRFTSF

Arabidopsis Description

MEB2Membrane protein of ER body 2 [Source:UniProtKB/Swiss-Prot;Acc:F4KFS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.