CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89224	Canola	cytosol, nucleus, plasma membrane	56.58	44.87
Bra026304.1-P	Field mustard	cytosol, nucleus, plasma membrane	48.23	38.56
CDY31395	Canola	plasma membrane	8.35	20.41
CDX97398	Canola	mitochondrion, plasma membrane, plastid	19.83	20.26
CDY14269	Canola	cytosol	22.13	18.37
CDX92847	Canola	plastid	9.81	17.28
GSMUA_Achr6P36880_001	Banana	cytosol, nucleus, plasma membrane	9.19	15.77
TraesCS7B01G200500.1	Wheat	extracellular	3.34	14.04
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	8.77	13.68
GSMUA_Achr1P20170_001	Banana	nucleus	12.73	13.59
CDY67233	Canola	cytosol, nucleus, plasma membrane	16.7	13.49
CDY31394	Canola	cytosol, nucleus, plasma membrane	16.7	13.49
CDX92846	Canola	cytosol, nucleus, plasma membrane	17.12	13.36
VIT_00s0267g00030.t01	Wine grape	cytosol	11.06	13.25
PGSC0003DMT400001535	Potato	cytosol, peroxisome, plasma membrane	9.19	13.21
CDY19020	Canola	cytosol, nucleus, plasma membrane	16.28	13.15
VIT_00s0245g00010.t01	Wine grape	cytosol	10.02	13.15
CDY29865	Canola	cytosol, nucleus, plasma membrane	16.91	12.98
CDX89223	Canola	cytosol, nucleus, plasma membrane	16.08	12.9
KRH66122	Soybean	cytosol	11.48	12.17
Os06t0103800-01	Rice	plasma membrane	18.16	11.57
CDX80427	Canola	cytosol, nucleus, plasma membrane	11.48	11.32
CDX89222	Canola	nucleus	18.37	11.14
OQU75676	Sorghum	plasma membrane	17.12	11.05
PGSC0003DMT400071835	Potato	cytosol, nucleus, plasma membrane	13.36	11.02
CDY19019	Canola	nucleus	17.54	10.67
TraesCS6B01G375800.1	Wheat	extracellular	2.51	10.62
CDX88089	Canola	cytosol, nucleus, plasma membrane	11.9	10.61
Solyc09g059460.2.1	Tomato	cytosol	11.06	10.54
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	13.99	10.4
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	13.78	10.2
TraesCS4A01G457600.2	Wheat	nucleus	16.49	10.12
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	13.36	9.71
TraesCS4A01G457700.2	Wheat	nucleus	17.33	9.7
VIT_00s0245g00030.t01	Wine grape	plasma membrane	3.97	9.55
TraesCS7D01G028000.1	Wheat	nucleus	17.33	9.51
KRH72565	Soybean	cytosol, nucleus	10.86	9.37
TraesCS7D01G027900.2	Wheat	nucleus	16.7	9.18
HORVU7Hr1G003870.3	Barley	nucleus	16.91	9.14
TraesCS7A01G031400.2	Wheat	nucleus	16.7	9.1
Zm00001d035875_P002	Maize	nucleus	15.45	8.86
KRH16940	Soybean	cytosol, nucleus, plasma membrane	14.82	8.65
Solyc03g096800.2.1	Tomato	nucleus	16.28	6.71
HORVU7Hr1G003880.2	Barley	nucleus	5.01	5.73
TraesCS4A01G141900.1	Wheat	extracellular	0.21	0.84

Protein Annotations

EnsemblPlants:CDY19021	EnsemblPlantsGene:GSBRNA2T00006270001	GO:A0A078G180	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31851	PANTHER:PTHR31851:SF16	ProteinID:CDY19021	ProteinID:CDY19021.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDE66D	UniProt:A0A078G180	MapMan:24.2.12.2	:	:	:

Description

BnaC01g20470DBnaC01g20470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G180]

Coordinates

chrLK032091:-:402880..406295

Molecular Weight (calculated)

53389.3 Da

IEP (calculated)

4.804

GRAVY (calculated)

-0.431

Length

479 amino acids

Sequence
(BLAST)

001: MDPTDTNSQE HEGDFINITQ LSNPAGDENV DHPSADEVTN QTDVSPPQVT ENSKETKCGT DTTQETSRKD DGSETENDVG KEKHLEKDHE GSWSNVEDKK
101: GHEDVLKEIK MPKTHDLYCS NCTHNITGTA KLFKKGQETF PYNIDRFVFV IIFSFKYPFI YIPWLYNITQ DPVKTIQSDP IHRPEEPDKT NQLLTPEEPV
201: KRLKTDQPIP PVSPKEPVKL NQPNPLPPKV PSDPKRDNTL ATLLVNIREK LLPNRLPRLS PTSQRFLLVL VLLLLSVILL LTLPSRPSGP SPPSPPPQRP
301: SKHGNSKETD VQLGPGENVP ENGEGGDVSF SWLTNFLSSN YLSIILLLFL AILAVLWRSM IEVRENDQQD TGAVTNPQEL DDVTDQAEDT NHPVTEVIRI
401: KLLQLKLDIL KSIVYGGLIE SITSFGVVSS AAASGTSTLN VLALGLANLF SGLFIIIHNT EYWLVVLVRN KIKNVDIVE

Best Arabidopsis Sequence Match ( AT4G27860.1 )
(BLAST)

001: MDPTMNPTPT PSSAGNSVCT DELTNLPPED SPLDSEKDDS VDFSQEQGSE SNEAIDTENG SRSVDKNQYS ETEVVVRAKD LQTEPDSLDD DVEIVIKNQH
101: KYYIYCPCCG EDITKTVKLV KISDPKHTKD HDKAVDSDTE NGSKSKDKNT KVPSWFSDFI QPLFSSEDRG KKGVVDSELL GTYEDLGIIG EEPSIDVSNE
201: KDRPSFPKWY LDVFAWLFLC IIIALSVLST SPPPFIQPHL QLPSMPTLRM PSASVLLLLP TSAVLLLFII SMRSRFTPRY HKEKGEVVPK STDSKSHDDQ
301: AANTDQDFDK KTDNKRNRLT PIYPSSLEKP SKQTVNKETQ NHDKEAADPD QDVDKETENQ KSHLTPIYPS PLEQPSKQII NKETQTEPML PPNAQSEIPN
401: SVEPRKGGNK VEILKSIVYG GLTESITSLC TVTSAAASGA STLNVLALGV ANLSSGLLLT VHSLQELINE KPRKQTNTDD SPEEGEGEED RYEEVLGRRE
501: YSRIHRVIAI SSFVIFGLIP PLVYGFSFRK KMEKRQEYKV LAVYAVSLLC IVLLSIAKAY VSKKRDYVKT LFRYTTTATT ASGFSQFVGY LVSQWLEKSG
601: FYDDSPETQR V

Arabidopsis Description

vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27860]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.