CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31395	Canola	plasma membrane	25.8	61.73
CDY14269	Canola	cytosol	74.63	60.66
CDX92847	Canola	plastid	18.34	31.62
CDX89224	Canola	cytosol, nucleus, plasma membrane	39.02	30.3
TraesCS7B01G200500.1	Wheat	extracellular	7.04	28.95
TraesCS6B01G375800.1	Wheat	extracellular	6.82	28.32
VIT_00s0245g00030.t01	Wine grape	plasma membrane	11.73	27.64
GSMUA_Achr6P36880_001	Banana	cytosol, nucleus, plasma membrane	16.2	27.24
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	16.42	25.08
PGSC0003DMT400001535	Potato	cytosol, peroxisome, plasma membrane	17.7	24.92
VIT_00s0245g00010.t01	Wine grape	cytosol	18.76	24.11
VIT_00s0267g00030.t01	Wine grape	cytosol	18.76	22.0
GSMUA_Achr1P20170_001	Banana	nucleus	20.26	21.16
CDY67233	Canola	cytosol, nucleus, plasma membrane	25.59	20.24
CDY31394	Canola	cytosol, nucleus, plasma membrane	25.59	20.24
CDX89223	Canola	cytosol, nucleus, plasma membrane	25.37	19.93
CDY19021	Canola	cytosol, nucleus, plasma membrane	20.26	19.83
CDY19020	Canola	cytosol, nucleus, plasma membrane	24.31	19.22
TraesCS4A01G141900.1	Wheat	extracellular	4.69	18.49
KRH66122	Soybean	cytosol	17.7	18.36
CDX80427	Canola	cytosol, nucleus, plasma membrane	18.55	17.9
Solyc09g059460.2.1	Tomato	cytosol	18.98	17.69
CDX88089	Canola	cytosol, nucleus, plasma membrane	19.19	16.76
PGSC0003DMT400071835	Potato	cytosol, nucleus, plasma membrane	20.68	16.7
CDY29865	Canola	cytosol, nucleus, plasma membrane	22.17	16.67
CDX92846	Canola	cytosol, nucleus, plasma membrane	21.32	16.29
CDY19019	Canola	nucleus	26.01	15.5
CDX89222	Canola	nucleus	25.37	15.06
KRH72565	Soybean	cytosol, nucleus	17.48	14.77
Os06t0103800-01	Rice	plasma membrane	23.24	14.49
OQU75676	Sorghum	plasma membrane	21.54	13.61
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	18.34	13.35
TraesCS4A01G457600.2	Wheat	nucleus	22.17	13.32
Zm00001d035875_P002	Maize	nucleus	23.03	12.93
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	17.7	12.83
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	17.91	12.75
TraesCS7A01G031400.2	Wheat	nucleus	23.03	12.29
TraesCS7D01G027900.2	Wheat	nucleus	22.6	12.17
HORVU7Hr1G003870.3	Barley	nucleus	22.81	12.08
KRH16940	Soybean	cytosol, nucleus, plasma membrane	20.47	11.69
TraesCS7D01G028000.1	Wheat	nucleus	21.54	11.57
TraesCS4A01G457700.2	Wheat	nucleus	21.11	11.57
Solyc03g096800.2.1	Tomato	nucleus	21.75	8.78
HORVU7Hr1G003880.2	Barley	nucleus	3.41	3.82

Protein Annotations

EnsemblPlants:CDX97398	EnsemblPlantsGene:GSBRNA2T00104522001	GO:A0A078EDG5	PANTHER:PTHR31851	PANTHER:PTHR31851:SF16	ProteinID:CDX97398
ProteinID:CDX97398.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE9D8B	MapMan:24.2.12.2	:

Description

BnaC08g12630D

Coordinates

chrLK031899:+:326922..329222

Molecular Weight (calculated)

51650.1 Da

IEP (calculated)

8.818

GRAVY (calculated)

0.216

Length

469 amino acids

Sequence
(BLAST)

001: MQMQRLMIST GPGPHFLRTG TAHDLYCPNC THNITRTAEL FEKGKEKFQY NNENIILSFV IVVSFKYPFI FLPWFYNNTP DEPAPSVVSE TPKKHVPAWL
101: RFVLVVVLLL LSALVLLWIP PSPSPLSPSP IPPPTPHTNG NDKPIWPSPS TIVNKGGLVH FYWVKYLPSS RVLYVISLLL LAVLALFWPS MTRTKGTEPE
201: GKADLPNEKE VLGDKEGVPS LIGGLSTPGN KTNGSERAKE IPPPHVAPQP TTFAKILSIL RQHIVVPVHN VLQTELDILK SIVYGGLIES ITSFGVVSSA
301: AASGTSTLNV MALGLANLFS GLFLIIYNLY GLVMSEPFFP HAHIDNATDM KDKIDPYEQM LGNRNNVALH CIVVVVSFIF FGVIPPLFYG FSFKTTDNRY
401: YEAAVFVAAS LLCVITLSFG KAHAFKKDKL KTVAVYTGIA IGASAFSCIA SQHVRGLLEK YEFHKIASD

Best Arabidopsis Sequence Match ( AT4G27860.2 )
(BLAST)

001: MDPTMNPTPT PSSAGNSVCT DELTNLPPED SPLDSEKDDS VDFSQEQGSE SNEAIDTENG SRSVDKNQYS ETEVVVRAKD LQTEPDSLDD DVEIVIKNQH
101: KYYIYCPCCG EDITKTVKLV KISDPKHTKD HDKAVDSDTE NGSKSKDKNT KVPSWFSDFI QPLFSSEDRG KKGVVDSELL GTYEDLGIIG EEPSIDVSNE
201: KDRPSFPKWY LDVFAWLFLC IIIALSVLST SPPPFIQPHL QLPSMPTLRM PSASVLLLLP TSAVLLLFII SMRSRFTPRY HKEKGEVVPK STDSKSHDDQ
301: AANTDQDFDK KTEKPSKQTV NKETQNHDKE AADPDQDVDK ETENQKSHLT PIYPSPLEQP SKQIINKETQ TEPMLPPNAQ SEIPNSVEPR KGGNKVEILK
401: SIVYGGLTES ITSLCTVTSA AASGASTLNV LALGVANLSS GLLLTVHSLQ ELINEKPRKQ TNTDDSPEEG EGEEDRYEEV LGRREYSRIH RVIAISSFVI
501: FGLIPPLVYG FSFRKKMEKR QEYKVLAVYA VSLLCIVLLS IAKAYVSKKR DYVKTLFRYT TTATTASGFS QFVGYLVSQW LEKSGFYDDS PETQRV

Arabidopsis Description

vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27860]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.