CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009746.1-P	Field mustard	cytosol, nucleus, plasma membrane	96.28	99.61
CDX80427	Canola	cytosol, nucleus, plasma membrane	63.31	69.96
AT5G24290.1	Thale cress	cytosol	42.64	41.64
CDX92847	Canola	plastid	17.69	34.93
CDY31395	Canola	plasma membrane	12.48	34.18
VIT_00s0245g00030.t01	Wine grape	plasma membrane	12.1	32.66
GSMUA_Achr6P36880_001	Banana	cytosol, nucleus, plasma membrane	16.01	30.82
TraesCS6B01G375800.1	Wheat	extracellular	6.33	30.09
PGSC0003DMT400001535	Potato	cytosol, peroxisome, plasma membrane	17.5	28.23
TraesCS7B01G200500.1	Wheat	extracellular	5.96	28.07
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	14.71	25.73
VIT_00s0245g00010.t01	Wine grape	cytosol	16.95	24.93
VIT_00s0267g00030.t01	Wine grape	cytosol	17.88	24.0
GSMUA_Achr1P20170_001	Banana	nucleus	19.74	23.61
CDX92846	Canola	cytosol, nucleus, plasma membrane	25.51	22.31
Solyc09g059460.2.1	Tomato	cytosol	20.86	22.27
KRH66122	Soybean	cytosol	18.25	21.68
TraesCS4A01G141900.1	Wheat	extracellular	4.66	21.01
CDY29865	Canola	cytosol, nucleus, plasma membrane	23.65	20.35
PGSC0003DMT400071835	Potato	cytosol, nucleus, plasma membrane	21.04	19.45
CDX97398	Canola	mitochondrion, plasma membrane, plastid	16.76	19.19
CDY19019	Canola	nucleus	27.19	18.55
CDY67233	Canola	cytosol, nucleus, plasma membrane	20.3	18.38
CDY31394	Canola	cytosol, nucleus, plasma membrane	20.3	18.38
CDY19020	Canola	cytosol, nucleus, plasma membrane	20.3	18.38
CDX89223	Canola	cytosol, nucleus, plasma membrane	20.3	18.26
CDX89222	Canola	nucleus	26.63	18.1
CDY14269	Canola	cytosol	18.81	17.5
Os06t0103800-01	Rice	plasma membrane	24.39	17.42
KRH72565	Soybean	cytosol, nucleus	17.88	17.3
TraesCS4A01G457600.2	Wheat	nucleus	24.77	17.03
OQU75676	Sorghum	plasma membrane	23.28	16.85
CDX89224	Canola	cytosol, nucleus, plasma membrane	18.25	16.23
KRH16940	Soybean	cytosol, nucleus, plasma membrane	24.02	15.71
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	18.99	15.48
Zm00001d035875_P002	Maize	nucleus	23.28	14.97
TraesCS4A01G457700.2	Wheat	nucleus	23.84	14.95
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	17.88	14.91
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	17.5	14.53
TraesCS7D01G027900.2	Wheat	nucleus	23.09	14.24
TraesCS7D01G028000.1	Wheat	nucleus	22.91	14.09
HORVU7Hr1G003870.3	Barley	nucleus	23.09	14.0
TraesCS7A01G031400.2	Wheat	nucleus	22.91	13.99
CDY19021	Canola	cytosol, nucleus, plasma membrane	10.61	11.9
HORVU7Hr1G003880.2	Barley	nucleus	9.12	11.69
Solyc03g096800.2.1	Tomato	nucleus	23.65	10.93

Protein Annotations

EnsemblPlants:CDX88089	EnsemblPlantsGene:GSBRNA2T00147516001	GO:A0A078DI10	ncoils:Coil	PANTHER:PTHR31851	PANTHER:PTHR31851:SF16
ProteinID:CDX88089	ProteinID:CDX88089.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE1008	MapMan:24.2.12.2

Description

BnaA06g26800D

Coordinates

chrLK031854:-:540862..543157

Molecular Weight (calculated)

60117.5 Da

IEP (calculated)

4.484

GRAVY (calculated)

-0.444

Length

537 amino acids

Sequence
(BLAST)

001: MDRPADGSKF GERGEIVDAD FLVGLLETFR FGKYNLPAIK NVLNAPAKVT SATEQQQDKT IENQDEEGSQ GLVGNTSVHE SIGSVSSSSD PIILDTMSET
101: GSHNEPVSNE ESGSNNEPVL NEESGYNWLE SNPTNLPNVE NERHHNAEEG EIVVEEEIYK EDEEDKEDEE EEEDENKNSE RTSSESEEKS NLETLLAIQE
201: KYELYCPSCS SCITRKVILR KKEHVKLVDL YADLKPYEST DIEEIEPPVK LHVPETLIEN GDQEDKKEGY IFTCLACLKY YIRKGARFLQ RDYARGLPVE
301: ESVEVHLEPR KSSNTTETPP QNKLDRERFT VELLKSTVYG GLTETITSLV VVSSASASGS STENILALAV ANLAGGLIVL AQNLRDLRNN SDQENDRYNE
401: LLGRRDNIRL HVLVAVLSYI FFGLIAPLVY AFSFYQTGIK NYKLVSVFSV SLVCAIMLGM IKVYVRKPVN VRESPKPYLK SAAYYTSIVV VSSGVSHIVG
501: EIVGEYIRKL GLFSLYQTGL TSTFDGIKPE KYRFTSF

Best Arabidopsis Sequence Match ( AT5G24290.1 )
(BLAST)

001: MEKSNQPVHV TLSELKDGDK EIVDAEFLVD LLESYRFGKD NVPAREFRSK AAATAPAPVN TTEIELEEDN DGSQAQGNNS VSESTSSLFS DSDPIVLEST
101: VSETGSNEES ETGSNEENGN NWLESSSTNL PNVENKRQRN GEDCEIEEEE ENNERSLSDS EEKSNLEKLL GTQENYELGN EDEEKNERSS SDSEEKSNLE
201: NLLATQENYE LYCPSCSTCI TRNVVLKKRK RGKHVNSSLD LKPDIPVVEP DEPSDIEEME SPVKVYVPET RIEDDQEDKE GTIFTCLVCD LKYFIRLGTK
301: FLQLDYIRGK PVEKSVEEYI DVRKSINTTQ SPPQIQPDGE RFAIELLKST VYGGLTETIT SLGVVSSASA SGSSTMNILA LAVANLAGGL IVLAQNFQDL
401: RNSSDQEKDR YEELLGRRTK SRIHILVAVM SYIFFGLIPP LVYAFSFYET GIKNYKLISV FLGSLVCVIL LGSIKVYVRK PTNSCGSTKA YLKSAAYYTS
501: IVVASCGISY VVGDIMGEYI EKLSLVGLDQ ISITSPCYGI KPEECRFTSF

Arabidopsis Description

MEB2Membrane protein of ER body 2 [Source:UniProtKB/Swiss-Prot;Acc:F4KFS7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.