Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 3
- extracellular 4
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G375800.1 | Wheat | extracellular | 30.25 | 31.86 |
| TraesCS7B01G200500.1 | Wheat | extracellular | 29.41 | 30.7 |
| TraesCS7A01G031500.1 | Wheat | cytosol, peroxisome, plasma membrane | 56.3 | 21.82 |
| GSMUA_Achr6P36880_001 | Banana | cytosol, nucleus, plasma membrane | 32.77 | 13.98 |
| VIT_00s0245g00030.t01 | Wine grape | plasma membrane | 22.69 | 13.57 |
| Bra019020.1-P | Field mustard | plasma membrane, plastid | 29.41 | 12.77 |
| CDX92847 | Canola | plastid | 28.57 | 12.5 |
| PGSC0003DMT400001535 | Potato | cytosol, peroxisome, plasma membrane | 32.77 | 11.71 |
| CDY31395 | Canola | plasma membrane | 17.65 | 10.71 |
| TraesCS7A01G031200.1 | Wheat | cytosol, nucleus, plasma membrane | 54.62 | 10.05 |
| TraesCS4A01G458000.1 | Wheat | cytosol, nucleus, plasma membrane | 52.1 | 9.41 |
| GSMUA_Achr1P20170_001 | Banana | nucleus | 33.61 | 8.91 |
| TraesCS4A01G457600.2 | Wheat | nucleus | 54.62 | 8.32 |
| TraesCS4A01G457700.2 | Wheat | nucleus | 56.3 | 7.83 |
| KRH66122 | Soybean | cytosol | 29.41 | 7.74 |
| TraesCS7A01G031400.2 | Wheat | nucleus | 54.62 | 7.39 |
| Solyc09g059460.2.1 | Tomato | cytosol | 30.25 | 7.16 |
| VIT_00s0245g00010.t01 | Wine grape | cytosol | 21.85 | 7.12 |
| VIT_00s0267g00030.t01 | Wine grape | cytosol | 23.53 | 7.0 |
| PGSC0003DMT400071835 | Potato | cytosol, nucleus, plasma membrane | 30.25 | 6.2 |
| CDY29865 | Canola | cytosol, nucleus, plasma membrane | 31.93 | 6.09 |
| Bra019021.1-P | Field mustard | cytosol, nucleus, plasma membrane | 31.93 | 5.97 |
| KRH72565 | Soybean | cytosol, nucleus | 27.73 | 5.95 |
| CDX92846 | Canola | cytosol, nucleus, plasma membrane | 29.41 | 5.7 |
| CDX80427 | Canola | cytosol, nucleus, plasma membrane | 21.85 | 5.35 |
| CDY31394 | Canola | cytosol, nucleus, plasma membrane | 24.37 | 4.89 |
| CDY67233 | Canola | cytosol, nucleus, plasma membrane | 24.37 | 4.89 |
| CDY19020 | Canola | cytosol, nucleus, plasma membrane | 24.37 | 4.89 |
| Bra026303.1-P | Field mustard | cytosol, nucleus, plasma membrane | 24.37 | 4.88 |
| CDX89223 | Canola | cytosol, nucleus, plasma membrane | 24.37 | 4.86 |
| AT4G27860.3 | Thale cress | nucleus | 25.21 | 4.83 |
| Bra009746.1-P | Field mustard | cytosol, nucleus, plasma membrane | 21.01 | 4.82 |
| AT5G24290.1 | Thale cress | cytosol | 21.85 | 4.73 |
| CDX97398 | Canola | mitochondrion, plasma membrane, plastid | 18.49 | 4.69 |
| CDX88089 | Canola | cytosol, nucleus, plasma membrane | 21.01 | 4.66 |
| AT4G27870.2 | Thale cress | nucleus | 30.25 | 4.61 |
| CDY19019 | Canola | nucleus | 28.57 | 4.32 |
| CDX89222 | Canola | nucleus | 28.57 | 4.3 |
| Bra026302.1-P | Field mustard | nucleus | 26.89 | 4.06 |
| KRH16940 | Soybean | cytosol, nucleus, plasma membrane | 27.73 | 4.02 |
| CDY14269 | Canola | cytosol | 19.33 | 3.99 |
| Bra026304.1-P | Field mustard | cytosol, nucleus, plasma membrane | 18.49 | 3.67 |
| CDX89224 | Canola | cytosol, nucleus, plasma membrane | 18.49 | 3.64 |
| Bra010393.1-P | Field mustard | nucleus | 19.33 | 3.26 |
| Solyc03g096800.2.1 | Tomato | nucleus | 31.09 | 3.18 |
| CDY19021 | Canola | cytosol, nucleus, plasma membrane | 0.84 | 0.21 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G141900.1 | EnsemblPlantsGene:TraesCS4A01G141900 | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF16 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| MapMan:24.2.12.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:225313465..225313824
Molecular Weight (calculated)
13005.1 Da
IEP (calculated)
8.953
GRAVY (calculated)
0.512
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLALLSHMV FGPLPPVLCG LSFRESNDGE NKMMRCFARL HCAACARDVH VYRRAMTYFK TLIYYLTIAA SLSGISYVAD VLITRLLKHF GTIDLGGALA
101: PHASLGLLFS HLGHAHTSA
101: PHASLGLLFS HLGHAHTSA
001: MGSAAELTEP TTGTEKLHQP IEVEEDDEQI VDLERKTFRH GKGHDTSVDS STITNTSSSS SSSFSGDGGT EETPDFHSNG DGEHTDLVNL EVPELETEIV
101: FHQEHDDGKN CIVFFDGEQG SESAGAIPDA HEESQTADLN GEQTQLEPEN GSTSEDNERS REIEEVLDGD VSKDLDAVDP LAGEVIEEEV DFEDVEYHDV
201: ENMMDKQETH DLYCPNCDSC ITKKVILKRR KRKIRRHELG DSKRPHLTEP LFHSEDNLPS LDGGENSANE SFVFKCLSCF TIFIPKGVSS KPIPPRQGVE
301: GLKIQPNPQV EATGDSNWFS SIFGLNKKES AIQQGGASSS VLEANPPPRE SIVPVVNPSR GNLSPMRKDT TGSAVVQPDA ATSIQVAKSN DTSEIVNNGA
401: IVGDGQKFLA PMVEEQTQQK IDNDDSSTAD GNHTSDKGRL SPIQPSHGMS ILNTVTNGPD GLKVETTIHE EGAPLLFEGK DTPDTSTADF GLTKVTGVMD
501: TGDRGVITGP ANPEIDISAG NLLEEGSLRE PLMRRVVVQG RKLEILKSIV YGGLLEAITS LGVISSAAGS GASMLNILVL GLANLLGGLI LIIHNLQELR
601: EEEPIRTTTE DNQTNGREEE EGRYKRLLGR RENFTLHATV AILSFIITGI LPPVVYYFSF SEKHNKDYKV ASVFGASLFC IVLLAIAKAH VRYPRGSYLK
701: SILYYGSIAV SVSGISYVVG NFLEQLLEKH GWSDGSETPV GQMMLSSLMG RKAGFGYSSS Y
101: FHQEHDDGKN CIVFFDGEQG SESAGAIPDA HEESQTADLN GEQTQLEPEN GSTSEDNERS REIEEVLDGD VSKDLDAVDP LAGEVIEEEV DFEDVEYHDV
201: ENMMDKQETH DLYCPNCDSC ITKKVILKRR KRKIRRHELG DSKRPHLTEP LFHSEDNLPS LDGGENSANE SFVFKCLSCF TIFIPKGVSS KPIPPRQGVE
301: GLKIQPNPQV EATGDSNWFS SIFGLNKKES AIQQGGASSS VLEANPPPRE SIVPVVNPSR GNLSPMRKDT TGSAVVQPDA ATSIQVAKSN DTSEIVNNGA
401: IVGDGQKFLA PMVEEQTQQK IDNDDSSTAD GNHTSDKGRL SPIQPSHGMS ILNTVTNGPD GLKVETTIHE EGAPLLFEGK DTPDTSTADF GLTKVTGVMD
501: TGDRGVITGP ANPEIDISAG NLLEEGSLRE PLMRRVVVQG RKLEILKSIV YGGLLEAITS LGVISSAAGS GASMLNILVL GLANLLGGLI LIIHNLQELR
601: EEEPIRTTTE DNQTNGREEE EGRYKRLLGR RENFTLHATV AILSFIITGI LPPVVYYFSF SEKHNKDYKV ASVFGASLFC IVLLAIAKAH VRYPRGSYLK
701: SILYYGSIAV SVSGISYVVG NFLEQLLEKH GWSDGSETPV GQMMLSSLMG RKAGFGYSSS Y
Arabidopsis Description
Vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27870]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.