Factsheet for Bra026302.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89222	Canola	nucleus	88.58	88.35
Bra019020.1-P	Field mustard	plasma membrane, plastid	21.83	62.77
Bra019021.1-P	Field mustard	cytosol, nucleus, plasma membrane	37.31	46.15
AT4G27870.2	Thale cress	nucleus	44.92	45.33
GSMUA_Achr6P36880_001	Banana	cytosol, nucleus, plasma membrane	13.07	36.92
VIT_00s0245g00030.t01	Wine grape	plasma membrane	9.26	36.68
TraesCS7B01G200500.1	Wheat	extracellular	5.08	35.09
GSMUA_Achr1P20170_001	Banana	nucleus	18.4	32.29
PGSC0003DMT400001535	Potato	cytosol, peroxisome, plasma membrane	13.58	32.13
TraesCS6B01G375800.1	Wheat	extracellular	4.57	31.86
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	12.31	31.6
VIT_00s0245g00010.t01	Wine grape	cytosol	13.83	29.86
VIT_00s0267g00030.t01	Wine grape	cytosol	15.1	29.75
Bra009746.1-P	Field mustard	cytosol, nucleus, plasma membrane	17.89	27.17
TraesCS4A01G141900.1	Wheat	extracellular	4.06	26.89
Solyc09g059460.2.1	Tomato	cytosol	16.37	25.65
Bra026303.1-P	Field mustard	cytosol, nucleus, plasma membrane	18.65	24.75
KRH66122	Soybean	cytosol	13.83	24.11
Os06t0103800-01	Rice	plasma membrane	22.72	23.8
PGSC0003DMT400071835	Potato	cytosol, nucleus, plasma membrane	17.26	23.41
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	19.42	23.22
TraesCS7D01G028000.1	Wheat	nucleus	25.0	22.57
TraesCS4A01G457600.2	Wheat	nucleus	22.34	22.54
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	18.4	22.41
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	18.02	22.05
Bra026304.1-P	Field mustard	cytosol, nucleus, plasma membrane	16.12	21.2
OQU75676	Sorghum	plasma membrane	19.92	21.16
KRH16940	Soybean	cytosol, nucleus, plasma membrane	21.95	21.07
TraesCS7A01G031400.2	Wheat	nucleus	23.48	21.05
Zm00001d035875_P002	Maize	nucleus	22.21	20.96
HORVU7Hr1G003870.3	Barley	nucleus	23.48	20.88
TraesCS4A01G457700.2	Wheat	nucleus	22.59	20.79
TraesCS7D01G027900.2	Wheat	nucleus	22.59	20.44
KRH72565	Soybean	cytosol, nucleus	13.96	19.82
Bra010393.1-P	Field mustard	nucleus	17.39	19.41
HORVU7Hr1G003880.2	Barley	nucleus	10.15	19.09
Solyc03g096800.2.1	Tomato	nucleus	22.84	15.49

Protein Annotations

EnsemblPlants:Bra026302.1	EnsemblPlants:Bra026302.1-P	EnsemblPlantsGene:Bra026302	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31851	PANTHER:PTHR31851:SF16	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002543F20	UniProt:M4EBZ3
MapMan:24.2.12.2	:	:	:	:	:

Description

AT4G27870 (E=2e-177) | integral membrane family protein

Coordinates

chrA01:+:10132243..10136280

Molecular Weight (calculated)

85328.5 Da

IEP (calculated)

4.515

GRAVY (calculated)

-0.474

Length

788 amino acids

Sequence
(BLAST)

001: MGSAAEVNEP TTAGTEKLHQ PVKLEEEEEE QVVELERKTL SFPHGKRPDS ADGSTITTNN SSSSSFSEGI PDLRNGEGEH IGIENLEVPE SPVVGFHEEH
101: HDGNVFFDGE EGIWKCRHCD WTYREESLLC FETKGSESAD AEPDAHESHT AEKKEPVSEN GSASEDNKGP SGEIEEVQDT DLPKEVDAVV VQRTGDVIEE
201: EVDIDDVEDY NVEKVLDNQE THDLFCPNCH SCITKRVVLK KRKRKISHAV PEDPKRVRGP EPIDPILRSE DNEPSPPGGG DSSTPESFFY KCLSCFSIFI
301: PKGVDSKPVA PSETVERLNT QPKPQEEATA HSNWFGSKKK EPPVQQVGAM PSMPEASLPR DNPSVLGEDT AGSTANIPSK TPARVQEGPA TSVQDVSEIS
401: VSQDNKPVDD TPLIQVANSN DTSKGVNSGA TVENRQQFLV PSVDEEQTQQ KIDRDDGTSA AEENHSPDKG RLSPIQPSRD MNISNIVTSG PDGVRVETIF
501: HTEGVSHLFE GTDPRKPDFG LAKVTGVVDS GDGGPIRGID IPPLPVSSLE EGTLTEPLVR PAVTGPIVEG RKVEILKSIV YGGLIEAITS LGVISSAAGS
601: GASTLNILVL GLANLFGGLI LIIHNLQELR EEEPITTEDN QTNVQEEGRY KRLLGRRENF TLHVTVSIIS FIITGLLPPI VYYFSFSKTH NRDYKVASVF
701: GASLLCIVLL AIAKAHVRSP RGSHLKSVLK YAMIAVSVSG ISYVVGNFVD QLLEKYGWSD GSETPAGGMM LSLLGRKAGG SFGYSSSY

Best Arabidopsis Sequence Match ( AT4G27870.2 )
(BLAST)

001: MGSAAELTEP TTGTEKLHQP IEVEEDDEQI VDLERKTFRH GKGHDTSVDS STITNTSSSS SSSFSGDGGT EETPDFHSNG DGEHTDLVNL EVPELETEIV
101: FHQEHDDGKN CIVFFDGEQG IWKCRHCDWT YKEGSLLCKG SESAGAIPDA HEESQTADLN GEQTQLEPEN GSTSEDNERS REIEEVLDGD VSKDLDAVDP
201: LAGEVIEEEV DFEDVEYHDV ENMMDKQETH DLYCPNCDSC ITKKVILKRR KRKIRRHELG DSKRPHLTEP LFHSEDNLPS LDGGENSANE SFVFKCLSCF
301: TIFIPKGVSS KPIPPRQGVE GLKIQPNPQV EATGDSNWFS SIFGLNKKES AIQQGGASSS VLEANPPPRE SIVPVVNPSR GNLSPMRKDT TGSAVVQPDA
401: ATSIQVAKSN DTSEIVNNGA IVGDGQKFLA PMVEEQTQQK IDNDDSSTAD GNHTSDKGRL SPIQPSHGMS ILNTVTNGPD GLKVETTIHE EGAPLLFEGK
501: DTPDTSTADF GLTKVTGVMD TGDRGVITGP ANPEIDISAG NLLEEGSLRE PLMRRVVVQG RKLEILKSIV YGGLLEAITS LGVISSAAGS GASMLNILVL
601: GLANLLGGLI LIIHNLQELR EEEPIRTTTE DNQTNGREEE EGRYKRLLGR RENFTLHATV AILSFIITGI LPPVVYYFSF SEKHNKDYKV ASVFGASLFC
701: IVLLAIAKAH VRYPRGSYLK SILYYGSIAV SVSGISYVVG NFLEQLLEKH GWSDGSETPV GQMMLSSLMG RKAGFGYSSS Y

Arabidopsis Description

Vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27870]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.