Factsheet for Bra019021.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29865	Canola	cytosol, nucleus, plasma membrane	91.84	93.75
Bra019020.1-P	Field mustard	plasma membrane, plastid	30.61	71.17
VIT_00s0245g00030.t01	Wine grape	plasma membrane	12.4	39.7
TraesCS7B01G200500.1	Wheat	extracellular	7.06	39.47
Bra026302.1-P	Field mustard	nucleus	46.15	37.31
GSMUA_Achr6P36880_001	Banana	cytosol, nucleus, plasma membrane	15.54	35.48
TraesCS6B01G375800.1	Wheat	extracellular	6.28	35.4
TraesCS7A01G031500.1	Wheat	cytosol, peroxisome, plasma membrane	16.33	33.88
AT4G27870.2	Thale cress	nucleus	41.29	33.67
TraesCS4A01G141900.1	Wheat	extracellular	5.97	31.93
PGSC0003DMT400001535	Potato	cytosol, peroxisome, plasma membrane	16.48	31.53
GSMUA_Achr1P20170_001	Banana	nucleus	21.98	31.18
VIT_00s0267g00030.t01	Wine grape	cytosol	18.05	28.75
VIT_00s0245g00010.t01	Wine grape	cytosol	16.33	28.49
Solyc09g059460.2.1	Tomato	cytosol	20.09	25.45
KRH66122	Soybean	cytosol	18.05	25.44
Bra009746.1-P	Field mustard	cytosol, nucleus, plasma membrane	20.09	24.66
PGSC0003DMT400071835	Potato	cytosol, nucleus, plasma membrane	21.04	23.06
Bra026303.1-P	Field mustard	cytosol, nucleus, plasma membrane	20.41	21.89
Os06t0103800-01	Rice	plasma membrane	24.02	20.35
TraesCS4A01G457600.2	Wheat	nucleus	24.65	20.1
TraesCS7D01G027600.1	Wheat	cytosol, nucleus, plasma membrane	19.78	19.57
TraesCS7A01G031200.1	Wheat	cytosol, nucleus, plasma membrane	19.62	19.32
OQU75676	Sorghum	plasma membrane	21.82	18.73
TraesCS4A01G458000.1	Wheat	cytosol, nucleus, plasma membrane	19.31	18.66
Bra026304.1-P	Field mustard	cytosol, nucleus, plasma membrane	17.43	18.53
TraesCS4A01G457700.2	Wheat	nucleus	24.18	17.99
TraesCS7D01G028000.1	Wheat	nucleus	24.65	17.98
Zm00001d035875_P002	Maize	nucleus	23.55	17.96
TraesCS7D01G027900.2	Wheat	nucleus	24.02	17.57
TraesCS7A01G031400.2	Wheat	nucleus	24.18	17.52
HORVU7Hr1G003870.3	Barley	nucleus	24.33	17.49
KRH72565	Soybean	cytosol, nucleus	15.23	17.48
KRH16940	Soybean	cytosol, nucleus, plasma membrane	21.98	17.05
Bra010393.1-P	Field mustard	nucleus	18.52	16.71
Solyc03g096800.2.1	Tomato	nucleus	25.12	13.77
HORVU7Hr1G003880.2	Barley	nucleus	8.32	12.65

Protein Annotations

EnsemblPlants:Bra019021.1	EnsemblPlants:Bra019021.1-P	EnsemblPlantsGene:Bra019021	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31851	PANTHER:PTHR31851:SF16	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002540BA2	UniProt:M4DR78
MapMan:24.2.12.2	:	:	:	:	:

Description

AT4G27870 (E=9e-092) | integral membrane family protein

Coordinates

chrA03:+:26717825..26720902

Molecular Weight (calculated)

69774.2 Da

IEP (calculated)

4.762

GRAVY (calculated)

-0.419

Length

637 amino acids

Sequence
(BLAST)

001: MAFAEVMELT TGTEKHHQEV EMKEEDDQVV GLERKTSSLA HEKRPDSADS STITTTNTSS SSSFSGDGER VTIESLEVYE SAEKEIGFHG EHDDVNNGNV
101: YLDVHQGSES SDAESDDHES QTVDHLNGKK KVTEFEKGSS SEESKGSREI DEVQDGDIPE EVEVIEEEEV DIEDVKDYKA KELVENQKTP DLLCPKCKNC
201: ITKVVVLKKR VLLRKKVAHK KNKQSNPNVP ERPAATRPSG TDDNLRSEDN MKSAVSSENP ITGSFFYKCL SCFSIFNIEP IVVGSNPVPP SEVNVGINTQ
301: LKPPQEPTGC SNWIVSMIGI KKNEQLEDKA MPSVPEANRP RDNHTPLVVD TAAPSPVQDD AVTLIQGKVR LSPIQPQHDV NVPKAITSGP NDSRVDIRQL
401: PVSSLEGETL DDPLLPPVVE RRKPEILKSI VYGGLTEAIT SLGVISSAAG SGASTLNILV LGLANLFGGL ILIIHNLQEL REEEPIIETT ANNGEEETRY
501: KRLLGRRENF MLHATLAIVS FIITGLLPPV VYYFSFRETH NKDYKVASVF GASLICITFL ALAKAHVRNP RGSYLKSVLY YATNAVSVSG ITYVVGNVVN
601: QLLEKYGWSD GSETPAGEMM LSLMGRKAGG FGYSSSY

Best Arabidopsis Sequence Match ( AT4G27870.1 )
(BLAST)

001: MGSAAELTEP TTGTEKLHQP IEVEEDDEQI VDLERKTFRH GKGHDTSVDS STITNTSSSS SSSFSGDGGT EETPDFHSNG DGEHTDLVNL EVPELETEIV
101: FHQEHDDGKN CIVFFDGEQG SESAGAIPDA HEESQTADLN GEQTQLEPEN GSTSEDNERS REIEEVLDGD VSKDLDAVDP LAGEVIEEEV DFEDVEYHDV
201: ENMMDKQETH DLYCPNCDSC ITKKVILKRR KRKIRRHELG DSKRPHLTEP LFHSEDNLPS LDGGENSANE SFVFKCLSCF TIFIPKGVSS KPIPPRQGVE
301: GLKIQPNPQV EATGDSNWFS SIFGLNKKES AIQQGGASSS VLEANPPPRE SIVPVVNPSR GNLSPMRKDT TGSAVVQPDA ATSIQVAKSN DTSEIVNNGA
401: IVGDGQKFLA PMVEEQTQQK IDNDDSSTAD GNHTSDKGRL SPIQPSHGMS ILNTVTNGPD GLKVETTIHE EGAPLLFEGK DTPDTSTADF GLTKVTGVMD
501: TGDRGVITGP ANPEIDISAG NLLEEGSLRE PLMRRVVVQG RKLEILKSIV YGGLLEAITS LGVISSAAGS GASMLNILVL GLANLLGGLI LIIHNLQELR
601: EEEPIRTTTE DNQTNGREEE EGRYKRLLGR RENFTLHATV AILSFIITGI LPPVVYYFSF SEKHNKDYKV ASVFGASLFC IVLLAIAKAH VRYPRGSYLK
701: SILYYGSIAV SVSGISYVVG NFLEQLLEKH GWSDGSETPV GQMMLSSLMG RKAGFGYSSS Y

Arabidopsis Description

Vacuolar iron transporter (VIT) family protein [Source:TAIR;Acc:AT4G27870]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.