Factsheet for Bra027009.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 8
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P
Bra030034.1-P
Bra032817.1-P
Bra033296.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62880.1	Bra033296.1-P	AT1G01010.1	21798944
AT1G62880.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G62880.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G62880.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G62880.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G62880.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G62880.1	Thale cress	endoplasmic reticulum, extracellular	54.85	82.48
Bra039259.1-P	Field mustard	endoplasmic reticulum	42.72	77.88
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	50.49	75.91
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	47.09	70.29
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	45.15	66.91
Solyc06g060550.2.1	Tomato	extracellular, plasma membrane, vacuole	44.17	65.47
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	42.23	63.5
KRH28013	Soybean	cytosol	33.01	61.82
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	40.78	61.31
GSMUA_Achr3P11390_001	Banana	plasma membrane	29.61	60.4
KRH77425	Soybean	plasma membrane	38.84	60.15
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	39.81	58.99
Solyc08g007510.2.1	Tomato	extracellular, plasma membrane, vacuole	39.81	58.99
GSMUA_Achr9P00470_001	Banana	plasma membrane	37.86	58.21
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	36.41	55.97
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	36.41	55.97
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	35.92	55.22
EER87801	Sorghum	endoplasmic reticulum	35.92	54.81
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	21.84	54.22
CDY45478	Canola	plasma membrane	63.59	53.91
Bra016774.1-P	Field mustard	plasma membrane	44.17	52.6
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	32.52	49.63
GSMUA_Achr10P...	Banana	plasma membrane	35.44	46.2
Bra034769.1-P	Field mustard	endoplasmic reticulum	26.7	37.67

Protein Annotations

EnsemblPlants:Bra027009.1	EnsemblPlants:Bra027009.1-P	EnsemblPlantsGene:Bra027009	Gene3D:3.80.10.10	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18	PFAM:PF03311	PRINTS:PR00019	SMART:SM01398
SUPFAM:SSF52058	TMHMM:TMhelix	UniParc:UPI00025424F9	UniProt:M4EDZ9	MapMan:35.1	:

Description

AT1G62880 (E=6e-063) | cornichon family protein

Coordinates

chrA09:-:7558309..7560095

Molecular Weight (calculated)

24089.4 Da

IEP (calculated)

6.094

GRAVY (calculated)

0.218

Length

206 amino acids

Sequence
(BLAST)

001: MGDVWTWIIS FLIHITLVGF IVYQLICLAD LEFDYINPYD SASRINFVVL PEFFLQGFLC FFYLVTGHWF MSLLGVPYLY YNFQLYSKRQ HLVDVTEIFN
101: LLDWEKKKRL FKLAYMILTL FLTIFWLESL DLSRNQLSGN IPQELSFLED INMSHNKLTG MIPQCTQLGG QNKSSFEGNI SLCGLPLQES IFRDKAQSNL
201: QSKNKC

Best Arabidopsis Sequence Match ( AT1G62880.1 )
(BLAST)

001: MGEVWTWIIS FLILITLLGL IVYQLISLAD LEFDYINPYD SASRINFVVL PESILQGFLC VFYLVTGHWF MALLCVPYLY YNFHLYSRKQ HLIDVTEIFN
101: LLDWEKKKRL FKLAYIILTL FLTIFWLIYS TLDDYED

Arabidopsis Description

Protein cornichon homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWT5]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.