Factsheet for Bra034769.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42135	Canola	endoplasmic reticulum	99.32	99.32
CDY08445	Canola	endoplasmic reticulum	98.63	98.63
AT3G12180.1	Thale cress	endoplasmic reticulum	93.15	93.15
VIT_08s0007g07860.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	54.11	60.31
KRH67017	Soybean	plasma membrane	44.52	54.62
GSMUA_Achr6P36290_001	Banana	golgi, plasma membrane, vacuole	48.63	47.65
KRG95334	Soybean	plasma membrane	45.89	47.18
TraesCS5B01G108800.1	Wheat	endoplasmic reticulum	47.95	46.98
TraesCS5A01G104500.1	Wheat	endoplasmic reticulum	47.95	46.98
EES16032	Sorghum	endoplasmic reticulum	47.95	46.98
Os12t0506400-01	Rice	endoplasmic reticulum, plasma membrane, vacuole	47.26	46.31
TraesCS5D01G116400.1	Wheat	endoplasmic reticulum	47.95	45.75
KRH33017	Soybean	plasma membrane	47.95	45.45
Zm00001d041744_P001	Maize	endoplasmic reticulum, extracellular, vacuole	42.47	44.29
HORVU5Hr1G028480.1	Barley	cytosol, vacuole	39.73	44.27
Zm00001d035235_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	47.95	41.67
KRH71885	Soybean	plasma membrane	47.95	41.18
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	38.36	40.88
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	36.99	40.0
Bra039259.1-P	Field mustard	endoplasmic reticulum	30.82	39.82
GSMUA_Achr5P22320_001	Banana	plasma membrane	49.32	38.92
Solyc03g063970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	45.89	35.83
Bra016774.1-P	Field mustard	plasma membrane	33.56	28.32
Bra027009.1-P	Field mustard	plasma membrane	37.67	26.7

Protein Annotations

EnsemblPlants:Bra034769.1	EnsemblPlants:Bra034769.1-P	EnsemblPlantsGene:Bra034769	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18
PFAM:PF03311	SMART:SM01398	TMHMM:TMhelix	UniParc:UPI0002547475	UniProt:M4F124	MapMan:35.1

Description

AT3G12180 (E=9e-078) | cornichon family protein

Coordinates

chrA05:-:21335164..21336105

Molecular Weight (calculated)

17372.6 Da

IEP (calculated)

6.082

GRAVY (calculated)

0.833

Length

146 amino acids

Sequence
(BLAST)

001: MAWDLFLWIL SFFVSLALVA SVFYQVICLT DLEADYLNPF ETSTRINRLI LPEFILQGSL CVLFLITWHW VFFLVALPVT CYHAMLYKER RHLIDVTEVF
101: RGISFEKKLR FTKLGFYIFL FIMVVFRLTL SAVYSFTEDD DLLHLF

Best Arabidopsis Sequence Match ( AT3G12180.1 )
(BLAST)

001: MAWDLFLWIV SFFVSLALVA SVFYQVICLT DLEADYLNPF ETSTRINRLV IPEFILQGSL CLLFLLTWHW VFFLVAVPVT VYHAMLYKER RYLIDVTEVF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF

Arabidopsis Description

Protein cornichon homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7D7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.