Subcellular Localization
min:
: max
Winner_takes_all: vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G108800.1 | Wheat | endoplasmic reticulum | 79.39 | 69.8 |
| TraesCS5A01G104500.1 | Wheat | endoplasmic reticulum | 79.39 | 69.8 |
| TraesCS5D01G116400.1 | Wheat | endoplasmic reticulum | 80.15 | 68.63 |
| EES16032 | Sorghum | endoplasmic reticulum | 70.99 | 62.42 |
| Os12t0506400-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 69.47 | 61.07 |
| Zm00001d041744_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 63.36 | 59.29 |
| Zm00001d035235_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 70.23 | 54.76 |
| GSMUA_Achr6P36290_001 | Banana | golgi, plasma membrane, vacuole | 61.83 | 54.36 |
| VIT_08s0007g07860.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 49.62 | 49.62 |
| GSMUA_Achr5P22320_001 | Banana | plasma membrane | 62.6 | 44.32 |
| KRH67017 | Soybean | plasma membrane | 39.69 | 43.7 |
| KRG95334 | Soybean | plasma membrane | 45.8 | 42.25 |
| AT3G12180.1 | Thale cress | endoplasmic reticulum | 45.8 | 41.1 |
| CDY08445 | Canola | endoplasmic reticulum | 45.04 | 40.41 |
| Bra034769.1-P | Field mustard | endoplasmic reticulum | 44.27 | 39.73 |
| CDY50566 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.27 | 39.73 |
| CDY52620 | Canola | endoplasmic reticulum | 43.51 | 39.04 |
| CDY42135 | Canola | endoplasmic reticulum | 43.51 | 39.04 |
| KRH33017 | Soybean | plasma membrane | 45.04 | 38.31 |
| KRH71885 | Soybean | plasma membrane | 46.56 | 35.88 |
| Solyc03g063970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 42.75 | 29.95 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G028480.1 | EnsemblPlantsGene:HORVU5Hr1G028480 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | InterPro:Cornichon | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 | PFAM:PF03311 |
| SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI000B4809F3 | UniProt:A0A287QRL0 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr5H:+:167689967..167692964
Molecular Weight (calculated)
15869.6 Da
IEP (calculated)
8.448
GRAVY (calculated)
0.455
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: LAYKLICLSD LEFDYINPYD SSSRINAVVI IEYTLQGVLC ASFLLTLNWF PFLVMAPVTY YHVKLYMNRK HLIDVTEIFR QLHGEKKYRL IKLAFYFALF
101: IISIYRFDSR LFNLIYHFYD WINCFCKCFH I
101: IISIYRFDSR LFNLIYHFYD WINCFCKCFH I
001: MAWDLFLWIV SFFVSLALVA SVFYQVICLT DLEADYLNPF ETSTRINRLV IPEFILQGSL CLLFLLTWHW VFFLVAVPVT VYHAMLYKER RYLIDVTEVF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF
Arabidopsis Description
Protein cornichon homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7D7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.