Factsheet for Os12t0506400-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16032	Sorghum	endoplasmic reticulum	88.59	88.59
TraesCS5B01G108800.1	Wheat	endoplasmic reticulum	85.91	85.91
TraesCS5A01G104500.1	Wheat	endoplasmic reticulum	85.23	85.23
TraesCS5D01G116400.1	Wheat	endoplasmic reticulum	85.91	83.66
Zm00001d035235_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	86.58	76.79
Zm00001d041744_P001	Maize	endoplasmic reticulum, extracellular, vacuole	68.46	72.86
HORVU5Hr1G028480.1	Barley	cytosol, vacuole	61.07	69.47
GSMUA_Achr6P36290_001	Banana	golgi, plasma membrane, vacuole	67.79	67.79
VIT_08s0007g07860.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	49.66	56.49
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	30.2	54.22
GSMUA_Achr5P22320_001	Banana	plasma membrane	65.1	52.43
CDY08445	Canola	endoplasmic reticulum	46.98	47.95
CDY52620	Canola	endoplasmic reticulum	46.98	47.95
Bra034769.1-P	Field mustard	endoplasmic reticulum	46.31	47.26
CDY50566	Canola	endoplasmic reticulum, extracellular, plasma membrane	46.31	47.26
AT3G12180.1	Thale cress	endoplasmic reticulum	46.31	47.26
CDY42135	Canola	endoplasmic reticulum	45.64	46.58
KRH67017	Soybean	plasma membrane	36.91	46.22
KRH33017	Soybean	plasma membrane	47.65	46.1
KRG95334	Soybean	plasma membrane	42.28	44.37
KRH71885	Soybean	plasma membrane	48.32	42.35
Solyc03g063970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	48.99	39.04

Protein Annotations

EMBL:AK060944	EnsemblPlants:Os12t0506400-01	EnsemblPlantsGene:Os12g0506400	EntrezGene:4352293	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290
PANTHER:PTHR12290:SF18	PFAM:PF03311	ProteinID:ABA98682.1	ProteinID:BAF29856.1	ProteinID:BAT17291.1	RefSeq:XP_015620299.1
SMART:SM01398	TMHMM:TMhelix	UniParc:UPI000068101C	UniProt:Q2QQ55	MapMan:35.1	:

Description

cornichon 2Cornichon family protein. (Os12t0506400-01)

Coordinates

chr12:+:19424812..19428447

Molecular Weight (calculated)

17491.7 Da

IEP (calculated)

5.607

GRAVY (calculated)

0.652

Length

149 amino acids

Sequence
(BLAST)

001: MSIELILWLF SFASIMVLIG LTAYQLICLS DLEFDYINPY DSSSRINSVV LIEYALQGAL CASFLLTLHW FPFLVMAPVA YYHGKLYMDR KHLVDVTEIF
101: RQLNWEKKYR MIKLAFYFSL FIITIYRLVM TAVTLFIDED ANLVDTRTI

Best Arabidopsis Sequence Match ( AT3G12180.1 )
(BLAST)

001: MAWDLFLWIV SFFVSLALVA SVFYQVICLT DLEADYLNPF ETSTRINRLV IPEFILQGSL CLLFLLTWHW VFFLVAVPVT VYHAMLYKER RYLIDVTEVF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF

Arabidopsis Description

Protein cornichon homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7D7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.