Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16032 | Sorghum | endoplasmic reticulum | 79.29 | 74.5 |
| TraesCS5B01G108800.1 | Wheat | endoplasmic reticulum | 74.29 | 69.8 |
| TraesCS5A01G104500.1 | Wheat | endoplasmic reticulum | 74.29 | 69.8 |
| Os12t0506400-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 72.86 | 68.46 |
| TraesCS5D01G116400.1 | Wheat | endoplasmic reticulum | 74.29 | 67.97 |
| Zm00001d035235_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 78.57 | 65.48 |
| HORVU5Hr1G028480.1 | Barley | cytosol, vacuole | 59.29 | 63.36 |
| GSMUA_Achr6P36290_001 | Banana | golgi, plasma membrane, vacuole | 62.86 | 59.06 |
| VIT_08s0007g07860.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 50.0 | 53.44 |
| KRH33017 | Soybean | plasma membrane | 51.43 | 46.75 |
| GSMUA_Achr5P22320_001 | Banana | plasma membrane | 60.71 | 45.95 |
| KRH67017 | Soybean | plasma membrane | 38.57 | 45.38 |
| AT3G12180.1 | Thale cress | endoplasmic reticulum | 45.0 | 43.15 |
| CDY08445 | Canola | endoplasmic reticulum | 45.0 | 43.15 |
| CDY52620 | Canola | endoplasmic reticulum | 45.0 | 43.15 |
| Bra034769.1-P | Field mustard | endoplasmic reticulum | 44.29 | 42.47 |
| CDY50566 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.29 | 42.47 |
| CDY42135 | Canola | endoplasmic reticulum | 44.29 | 42.47 |
| KRH71885 | Soybean | plasma membrane | 50.71 | 41.76 |
| KRG95334 | Soybean | plasma membrane | 42.14 | 41.55 |
| Solyc03g063970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 45.71 | 34.22 |
Protein Annotations
| EnsemblPlants:Zm00001d041744_P001 | EnsemblPlants:Zm00001d041744_T001 | EnsemblPlantsGene:Zm00001d041744 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Cornichon | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 |
| PFAM:PF03311 | ProteinID:ONM33586.1 | SEG:seg | SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI000220F91D |
| UniProt:A0A1D6MXY5 | MapMan:35.1 | : | : | : | : |
Description
Protein cornichon homolog 1
Coordinates
chr3:-:135684991..135688182
Molecular Weight (calculated)
16413.5 Da
IEP (calculated)
8.036
GRAVY (calculated)
0.766
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVELILWLF SFASVVLLVG LTVYQLLCLV DLEYDYINPF DSSSRVNAVV MKEYSLQGAL CASFLLTLHW LPFLLMAPVT YYHVKLYLAR KHLVDVTEIF
101: RQLNGEKKYR TIKLAFYFCL FIVTIYRFDF GYILINILVN
101: RQLNGEKKYR TIKLAFYFCL FIVTIYRFDF GYILINILVN
001: MAWDLFLWIV SFFVSLALVA SVFYQVICLT DLEADYLNPF ETSTRINRLV IPEFILQGSL CLLFLLTWHW VFFLVAVPVT VYHAMLYKER RYLIDVTEVF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF
Arabidopsis Description
Protein cornichon homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7D7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.