Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 6
- extracellular 4
- vacuole 5
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g07860.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 42.25 | 60.31 |
| Os12t0506400-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 39.04 | 48.99 |
| CDY52620 | Canola | endoplasmic reticulum | 37.97 | 48.63 |
| CDY50566 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 37.43 | 47.95 |
| GSMUA_Achr6P36290_001 | Banana | golgi, plasma membrane, vacuole | 37.97 | 47.65 |
| EES16032 | Sorghum | endoplasmic reticulum | 37.43 | 46.98 |
| CDY08445 | Canola | endoplasmic reticulum | 36.36 | 46.58 |
| Bra034769.1-P | Field mustard | endoplasmic reticulum | 35.83 | 45.89 |
| CDY42135 | Canola | endoplasmic reticulum | 35.83 | 45.89 |
| Zm00001d041744_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 34.22 | 45.71 |
| TraesCS5A01G104500.1 | Wheat | endoplasmic reticulum | 36.36 | 45.64 |
| TraesCS5B01G108800.1 | Wheat | endoplasmic reticulum | 36.36 | 45.64 |
| AT3G12180.1 | Thale cress | endoplasmic reticulum | 34.76 | 44.52 |
| TraesCS5D01G116400.1 | Wheat | endoplasmic reticulum | 36.36 | 44.44 |
| HORVU5Hr1G028480.1 | Barley | cytosol, vacuole | 29.95 | 42.75 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 31.55 | 42.45 |
| KRH67017 | Soybean | plasma membrane | 26.74 | 42.02 |
| Zm00001d035235_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 37.43 | 41.67 |
| KRH33017 | Soybean | plasma membrane | 34.22 | 41.56 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 29.95 | 40.29 |
| KRG95334 | Soybean | plasma membrane | 29.95 | 39.44 |
| Solyc05g051030.2.1 | Tomato | plasma membrane | 28.34 | 38.97 |
| KRH71885 | Soybean | plasma membrane | 34.22 | 37.65 |
| GSMUA_Achr5P22320_001 | Banana | plasma membrane | 36.9 | 37.3 |
Protein Annotations
| EnsemblPlants:Solyc03g063970.2.1 | EnsemblPlantsGene:Solyc03g063970.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | InterPro:Cornichon | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF11 | PFAM:PF03311 |
| SEG:seg | SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI0002767831 | UniProt:K4BHD4 | MapMan:35.1 |
Description
No Description!
Coordinates
chr3:-:37168991..37179558
Molecular Weight (calculated)
21792.1 Da
IEP (calculated)
5.555
GRAVY (calculated)
0.744
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWEPILWLI FLAINIALIS LLIYQIVCLT DLEADYMNPY ESSSRINSVV LKEYILHGAF CILFLVTGHW FIFLLTLLPA YYNLRKFLSR QHLIDVTEVF
101: RFIESEKKIR ILKLGFYLVL FVLVLVRISN EGTHFLLCYQ FSRPLLEILT FSPQFLNSGH LVLSFINALV DEDEAIDFGS LPLPSFF
101: RFIESEKKIR ILKLGFYLVL FVLVLVRISN EGTHFLLCYQ FSRPLLEILT FSPQFLNSGH LVLSFINALV DEDEAIDFGS LPLPSFF
001: MAWDLFLWIV SFFVSLALVA SVFYQVICLT DLEADYLNPF ETSTRINRLV IPEFILQGSL CLLFLLTWHW VFFLVAVPVT VYHAMLYKER RYLIDVTEVF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF
Arabidopsis Description
Protein cornichon homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7D7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.