Factsheet for Solyc08g007510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009160.2.1
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12390.1	Solyc01g009160.2.1	AT2G27080.1	21798944
AT1G12390.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G12390.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G12390.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G12390.1	Solyc11g068750.1.1	AT5G22290.1	21798944
AT1G62880.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT1G62880.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G62880.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	97.12	97.12
Solyc06g060550.2.1	Tomato	extracellular, plasma membrane, vacuole	72.66	72.66
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	67.63	68.12
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	61.87	62.77
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	61.15	62.04
GSMUA_Achr3P11390_001	Banana	plasma membrane	43.88	60.4
KRH77425	Soybean	plasma membrane	56.83	59.4
KRH28013	Soybean	cytosol	46.76	59.09
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	56.83	58.96
GSMUA_Achr9P00470_001	Banana	plasma membrane	56.83	58.96
CDY21049	Canola	endoplasmic reticulum, extracellular, plasma membrane	57.55	58.39
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	56.12	58.21
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	56.12	58.21
Solyc05g051030.2.1	Tomato	plasma membrane	56.83	58.09
CDY26562	Canola	endoplasmic reticulum, extracellular, vacuole	56.83	57.66
AT1G62880.1	Thale cress	endoplasmic reticulum, extracellular	56.83	57.66
CDY31264	Canola	endoplasmic reticulum, extracellular, plasma membrane	56.83	57.66
CDY45964	Canola	endoplasmic reticulum, plasma membrane, vacuole	56.12	57.35
AT1G12390.1	Thale cress	endoplasmic reticulum, extracellular	56.12	56.93
CDY15996	Canola	endoplasmic reticulum	56.12	56.93
Bra039259.1-P	Field mustard	endoplasmic reticulum	46.04	56.64
AT1G12340.1	Thale cress	extracellular, plasma membrane, plastid	51.8	55.81
CDY32198	Canola	plasma membrane	45.32	55.75
CDX98068	Canola	endoplasmic reticulum, extracellular, vacuole	54.68	55.47
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	54.68	55.47
CDY30076	Canola	endoplasmic reticulum, extracellular, vacuole	54.68	55.47
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	33.09	55.42
EER87801	Sorghum	endoplasmic reticulum	53.24	54.81
GSMUA_Achr10P...	Banana	plasma membrane	53.96	47.47
AT4G12090.1	Thale cress	endoplasmic reticulum	43.88	45.19
CDY04395	Canola	endoplasmic reticulum, extracellular	41.73	42.96
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	41.73	42.96
CDY47431	Canola	endoplasmic reticulum, extracellular	41.73	42.96
Bra016774.1-P	Field mustard	plasma membrane	50.36	40.46
Bra027009.1-P	Field mustard	plasma membrane	58.99	39.81
CDY45478	Canola	plasma membrane	55.4	31.69
Solyc03g063970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	40.29	29.95

Protein Annotations

EnsemblPlants:Solyc08g007510.2.1	EnsemblPlantsGene:Solyc08g007510.2	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18	PFAM:PF03311
SMART:SM01398	TMHMM:TMhelix	UniParc:UPI000276C63C	UniProt:K4CIN8	MapMan:35.1	:

Description

No Description!

Coordinates

chr8:+:2061088..2066053

Molecular Weight (calculated)

16604.8 Da

IEP (calculated)

4.582

GRAVY (calculated)

0.807

Length

139 amino acids

Sequence
(BLAST)

001: MGDMLIWLLF FFIVVAILVM VIFQLISLTD LEFDYINPYE TASRINKVVL PEFITQGVLC FLYLVTGHWA MSLYCVPYLY YNVNMYMQRR HLIDVTEIFN
101: MLSWEKKQRI FKLAHIIILL VISLFWVIYS ALEDDELDL

Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)

001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED

Arabidopsis Description

Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.