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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 7
  • golgi 7
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, vacuole
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:endoplasmic reticulum
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:golgi, nucleus, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0812100-01
Os02t0509600-01
Os02t0643000-01
Os04t0534400-01
Os04t0644100-01
Os06t0101800-01
Os06t0179100-00
Os06t0645500-01
Os08t0156700-01
Os11t0130400-01
Os12t0127200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12390.1 Os04t0644100-01 AT1G15760.1 21798944
AT1G12390.1 Os06t0179100-00 AT1G15760.1 21798944
AT1G12390.1 Os06t0645500-01 AT1G15760.1 21798944
AT1G12390.1 Os01t0812100-01 AT2G27080.1 21798944
AT1G12390.1 Os11t0130400-01 AT2G27080.1 21798944
AT1G12390.1 Os12t0127200-01 AT2G27080.1 21798944
AT1G12390.1 Os02t0643000-01 AT3G60600.1 21798944
AT1G12390.1 Os04t0534400-01 AT3G60600.1 21798944
AT1G12390.1 Os08t0156700-01 AT3G60600.1 21798944
AT1G62880.1 Os06t0101800-01 AT1G01010.1 21798944
AT1G62880.1 Os02t0509600-01 AT1G27300.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER87801 Sorghum endoplasmic reticulum 95.18 58.52
TraesCS7A01G075500.1 Wheat endoplasmic reticulum 91.57 56.72
TraesCS7D01G071100.1 Wheat endoplasmic reticulum 90.36 55.97
TraesCS4A01G373700.1 Wheat endoplasmic reticulum 90.36 55.97
GSMUA_Achr9P00470_001 Banana plasma membrane 78.31 48.51
GSMUA_Achr3P11390_001 Banana plasma membrane 49.4 40.59
KRH57311 Soybean endoplasmic reticulum, extracellular, plasma membrane 63.86 38.69
KRH04043 Soybean endoplasmic reticulum, plasma membrane, vacuole 62.65 37.96
KRH77425 Soybean plasma membrane 60.24 37.59
GSMUA_Achr10P... Banana plasma membrane 71.08 37.34
Bra039259.1-P Field mustard endoplasmic reticulum 50.6 37.17
VIT_02s0025g05160.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 61.45 36.96
Solyc06g060550.2.1 Tomato extracellular, plasma membrane, vacuole 60.24 35.97
PGSC0003DMT400018058 Potato endoplasmic reticulum 57.83 35.82
CDY31264 Canola endoplasmic reticulum, extracellular, plasma membrane 59.04 35.77
CDY32198 Canola plasma membrane 48.19 35.4
Solyc05g051030.2.1 Tomato plasma membrane 57.83 35.29
PGSC0003DMT400045318 Potato endoplasmic reticulum, extracellular, vacuole 59.04 35.25
VIT_15s0048g00890.t01 Wine grape endoplasmic reticulum, extracellular 56.63 35.07
AT1G12390.1 Thale cress endoplasmic reticulum, extracellular 57.83 35.04
CDY21049 Canola endoplasmic reticulum, extracellular, plasma membrane 57.83 35.04
CDY26562 Canola endoplasmic reticulum, extracellular, vacuole 56.63 34.31
PGSC0003DMT400032506 Potato endoplasmic reticulum, extracellular, vacuole 56.63 33.81
PGSC0003DMT400033256 Potato endoplasmic reticulum, extracellular, vacuole 54.22 33.58
CDY15996 Canola endoplasmic reticulum 55.42 33.58
Solyc08g007510.2.1 Tomato extracellular, plasma membrane, vacuole 55.42 33.09
CDY45964 Canola endoplasmic reticulum, plasma membrane, vacuole 54.22 33.09
CDX98068 Canola endoplasmic reticulum, extracellular, vacuole 54.22 32.85
AT1G62880.1 Thale cress endoplasmic reticulum, extracellular 54.22 32.85
Bra019762.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 54.22 32.85
CDY30076 Canola endoplasmic reticulum, extracellular, vacuole 54.22 32.85
PGSC0003DMT400033255 Potato endoplasmic reticulum, plasma membrane, vacuole 42.17 32.11
AT1G12340.1 Thale cress extracellular, plasma membrane, plastid 49.4 31.78
AT4G12090.1 Thale cress endoplasmic reticulum 50.6 31.11
KRH28013 Soybean cytosol 40.96 30.91
CDY47431 Canola endoplasmic reticulum, extracellular 49.4 30.37
CDY04395 Canola endoplasmic reticulum, extracellular 49.4 30.37
Bra033120.1-P Field mustard endoplasmic reticulum, extracellular 49.4 30.37
Os12t0506400-01 Rice endoplasmic reticulum, plasma membrane, vacuole 54.22 30.2
KRH40600 Soybean endoplasmic reticulum, plasma membrane, vacuole 49.4 30.15
KRH00566 Soybean endoplasmic reticulum, plasma membrane, vacuole 46.99 28.68
Bra016774.1-P Field mustard plasma membrane 45.78 21.97
Bra027009.1-P Field mustard plasma membrane 54.22 21.84
CDY45478 Canola plasma membrane 54.22 18.52
Protein Annotations
EnsemblPlants:Os06t0136500-01EnsemblPlantsGene:Os06g0136500GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0016192InterPro:CornichonPANTHER:PTHR12290PANTHER:PTHR12290:SF18PFAM:PF03311
ProteinID:BAF18640.1ProteinID:BAS96035.1SEG:segSMART:SM01398TMHMM:TMhelixUniParc:UPI0000E1266F
UniProt:Q0DET3MapMan:35.1::::
Description
cornichon 1Cornichon family protein. (Os06t0136500-01)
Coordinates
chr6:+:1927256..1930767
Molecular Weight (calculated)
9560.0 Da
IEP (calculated)
4.227
GRAVY (calculated)
1.259
Length
83 amino acids
Sequence
(BLAST)
1: MVFVWLTAFF LVVALIVLVI YQLMCLADLE FDYINPFDSS SRINKVVIPE FVLQAALSVL FLLSGHWAMF LLSAPMVYYN YTL
Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.