Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- extracellular 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G432100.1 | Wheat | cytosol | 61.34 | 70.53 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 60.5 | 69.57 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 63.03 | 69.12 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 59.24 | 68.78 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 60.92 | 66.51 |
| EER90109 | Sorghum | nucleus | 58.4 | 62.61 |
| Zm00001d046580_P001 | Maize | cytosol | 52.52 | 59.24 |
| Zm00001d036740_P001 | Maize | cytosol | 48.74 | 57.71 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 21.85 | 33.77 |
| Os04t0644100-01 | Rice | cytosol | 26.47 | 33.51 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 26.05 | 32.63 |
| PGSC0003DMT400073435 | Potato | cytosol | 25.63 | 31.94 |
| KRH09696 | Soybean | cytosol | 26.05 | 31.63 |
| Solyc06g068310.1.1 | Tomato | cytosol | 25.63 | 31.61 |
| CDY39968 | Canola | cytosol | 23.11 | 31.07 |
| Bra035174.1-P | Field mustard | cytosol | 23.11 | 31.07 |
| CDX87319 | Canola | cytosol | 23.11 | 31.07 |
| Solyc03g117340.1.1 | Tomato | cytosol | 23.11 | 30.39 |
| AT1G80520.1 | Thale cress | nucleus | 24.37 | 30.21 |
| KRH23610 | Soybean | cytosol | 24.37 | 30.21 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 23.95 | 30.16 |
| Bra003571.1-P | Field mustard | cytosol | 23.53 | 29.95 |
| CDX67952 | Canola | cytosol | 23.53 | 29.95 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 21.85 | 29.55 |
| PGSC0003DMT400084778 | Potato | nucleus | 23.11 | 29.41 |
| CDX79380 | Canola | cytosol | 23.95 | 29.38 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 21.43 | 28.98 |
| PGSC0003DMT400073434 | Potato | cytosol | 15.97 | 28.36 |
| AT1G15760.1 | Thale cress | nucleus | 23.53 | 27.72 |
| OQU80824 | Sorghum | plastid | 23.53 | 27.59 |
| CDY61373 | Canola | cytosol | 23.11 | 27.23 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 21.85 | 27.08 |
| Bra026110.1-P | Field mustard | cytosol | 22.69 | 26.73 |
| CDY36586 | Canola | nucleus | 22.69 | 26.73 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 24.79 | 25.11 |
| KRH47406 | Soybean | cytosol | 20.59 | 24.14 |
| PGSC0003DMT400036834 | Potato | nucleus | 21.01 | 23.81 |
| Solyc03g117310.1.1 | Tomato | cytosol | 20.59 | 23.33 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 23.95 | 22.71 |
| KRH44503 | Soybean | cytosol | 20.59 | 22.58 |
| AT2G12462.1 | Thale cress | cytosol | 23.53 | 22.49 |
| CDX93107 | Canola | cytosol | 23.11 | 22.18 |
| Bra013153.1-P | Field mustard | cytosol | 23.11 | 22.18 |
| CDY50403 | Canola | cytosol | 23.11 | 22.18 |
| PGSC0003DMT400078859 | Potato | cytosol | 22.27 | 20.95 |
| Solyc07g007350.1.1 | Tomato | cytosol | 21.85 | 20.39 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 23.11 | 18.15 |
| KRH20227 | Soybean | cytosol | 21.85 | 17.63 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 20.59 | 17.25 |
| KRH37823 | Soybean | nucleus | 21.01 | 17.06 |
| KRH03583 | Soybean | nucleus | 22.69 | 16.98 |
Protein Annotations
| EnsemblPlants:Os06t0645500-01 | EnsemblPlantsGene:Os06g0645500 | EntrezGene:4341653 | Gene3D:1.10.150.50 | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 |
| PANTHER:PTHR33915:SF4 | ProteinID:BAD37449.1 | ProteinID:BAD37602.1 | ProteinID:BAF20106.1 | ProteinID:BAS98855.1 | RefSeq:XP_015642722.1 |
| SEG:seg | SUPFAM:SSF47769 | UniParc:UPI00004262C4 | UniProt:Q67W67 | MapMan:35.2 | : |
Description
Sterile alpha motif homology domain containing protein. (Os06t0645500-01)
Coordinates
chr6:-:26346136..26347098
Molecular Weight (calculated)
25330.5 Da
IEP (calculated)
5.716
GRAVY (calculated)
-0.514
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWYAWLAKT GLAPALAYEY GRLFNQNELE RGDAAHFDHD LLKSMGIAVA KHRLEILKLA KKDSSSAADA GGGDSSSSSY AQLIARKAGR CIARCARRLA
101: RPRGVGGGRG SSVTVVPRIC SGDDAVRVGA VQAAATRRRR SVKKMVLMIT DGGATAARGG VGFAAGRFSG SQKASLMFHD CYEEEDDDYD HEEEARCGDG
201: AEGGDEDAEE ERCSDGGGGG GTDVEIKWDS MFQDLKPT
101: RPRGVGGGRG SSVTVVPRIC SGDDAVRVGA VQAAATRRRR SVKKMVLMIT DGGATAARGG VGFAAGRFSG SQKASLMFHD CYEEEDDDYD HEEEARCGDG
201: AEGGDEDAEE ERCSDGGGGG GTDVEIKWDS MFQDLKPT
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Arabidopsis Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.