Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002096_P001 | Maize | cytosol | 55.32 | 50.73 |
| EES11537 | Sorghum | cytosol | 49.47 | 50.0 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 48.94 | 46.23 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 49.47 | 44.71 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 47.34 | 42.38 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 29.26 | 35.71 |
| CDX87319 | Canola | cytosol | 30.32 | 32.2 |
| CDY39968 | Canola | cytosol | 30.32 | 32.2 |
| Bra035174.1-P | Field mustard | cytosol | 30.32 | 32.2 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 19.15 | 31.86 |
| CDX67952 | Canola | cytosol | 30.32 | 30.48 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 28.19 | 30.11 |
| Bra003571.1-P | Field mustard | cytosol | 29.79 | 29.95 |
| KRH23610 | Soybean | cytosol | 30.32 | 29.69 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 27.66 | 29.55 |
| CDX79380 | Canola | cytosol | 30.32 | 29.38 |
| PGSC0003DMT400073434 | Potato | cytosol | 20.74 | 29.1 |
| KRH09696 | Soybean | cytosol | 30.32 | 29.08 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 29.26 | 28.95 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 28.72 | 28.12 |
| AT1G80520.1 | Thale cress | nucleus | 28.19 | 27.6 |
| CDY36586 | Canola | nucleus | 29.26 | 27.23 |
| Bra026110.1-P | Field mustard | cytosol | 29.26 | 27.23 |
| Solyc03g117340.1.1 | Tomato | cytosol | 26.06 | 27.07 |
| AT1G15760.1 | Thale cress | nucleus | 28.72 | 26.73 |
| CDY61373 | Canola | cytosol | 28.72 | 26.73 |
| PGSC0003DMT400073435 | Potato | cytosol | 27.13 | 26.7 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 33.51 | 26.47 |
| Solyc06g068310.1.1 | Tomato | cytosol | 27.13 | 26.42 |
| PGSC0003DMT400084778 | Potato | nucleus | 26.06 | 26.2 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 26.06 | 25.93 |
| Solyc03g117310.1.1 | Tomato | cytosol | 28.19 | 25.24 |
| PGSC0003DMT400036834 | Potato | nucleus | 27.66 | 24.76 |
| KRH47406 | Soybean | cytosol | 26.6 | 24.63 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 30.32 | 24.26 |
| PGSC0003DMT400078859 | Potato | cytosol | 31.38 | 23.32 |
| Solyc07g007350.1.1 | Tomato | cytosol | 31.38 | 23.14 |
| KRH44503 | Soybean | cytosol | 23.94 | 20.74 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 25.53 | 19.12 |
| Bra013153.1-P | Field mustard | cytosol | 25.0 | 18.95 |
| CDX93107 | Canola | cytosol | 25.0 | 18.95 |
| CDY50403 | Canola | cytosol | 25.0 | 18.95 |
| AT2G12462.1 | Thale cress | cytosol | 25.0 | 18.88 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 30.32 | 18.81 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 26.06 | 17.25 |
| KRH37823 | Soybean | nucleus | 26.06 | 16.72 |
| KRH20227 | Soybean | cytosol | 25.53 | 16.27 |
| KRH03583 | Soybean | nucleus | 25.53 | 15.09 |
Protein Annotations
| Gene3D:1.10.150.50 | MapMan:35.2 | EntrezGene:4337184 | EMBL:AK106954 | ProteinID:BAF15969.1 | ProteinID:BAS91292.1 |
| ProteinID:CAD41910.2 | ProteinID:EAZ32182.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001660 |
| EnsemblPlantsGene:Os04g0644100 | EnsemblPlants:Os04t0644100-01 | PFAM:PF07647 | PANTHER:PTHR33915 | PANTHER:PTHR33915:SF3 | UniProt:Q7XTN1 |
| InterPro:SAM | InterPro:SAM/pointed_sf | SUPFAM:SSF47769 | UniParc:UPI00001B0BE3 | RefSeq:XP_015635099.1 | SEG:seg |
Description
Sterile alpha motif homology domain containing protein. (Os04t0644100-01)
Coordinates
chr4:+:32773316..32774144
Molecular Weight (calculated)
20888.0 Da
IEP (calculated)
10.219
GRAVY (calculated)
-0.321
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMDWYAWLS AARLDQAVAY EYALVFSRNE LEADDLAYFD HEFLHSMGVS VAKHRLEILK LARRSRRRAA LSSRLVAAVD RVARYVRALV VVVVQGREDE
101: SSSALVLVPS QQLQPDVDKT PRRSRSKPKS TKEVAADAAA PTTPKAMRSP VLAIGGRAAS TVHAVKDGEK GGEDMVRWDR LFQDLKPN
101: SSSALVLVPS QQLQPDVDKT PRRSRSKPKS TKEVAADAAA PTTPKAMRSP VLAIGGRAAS TVHAVKDGEK GGEDMVRWDR LFQDLKPN
001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT
Arabidopsis Description
Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.